Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,162,765 | C→A | 12.5% | L247L (CTG→CTT) | pssA ← | CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,162,765 | 0 | C | A | 12.5% | 89.5 / 3.3 | 32 | L247L (CTG→CTT) | pssA | CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase |
Reads supporting (aligned to +/- strand): ref base C (13/15); new base A (2/2); total (15/17) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.00e-01 |
GCGGTGCGGTCACCGACAATCAGCTCCACCCCAACCCCCCGCGCCAGGGCATGGTCAAGTTCGCGCATCACGACCTG‑CGGCGGGTTGAAATACGGCGTACTGATGATGATCTGCGTGCGCGCCACTGCCAGCAAGGCGCACAGCGCCCGGTTCAGTGGATTGCCACGGCCCACACCCAGCAGCGGGATCACCTGCAGGCCCTGCCCCGTCACGCTGGCCGGTACCTCGTAGGCCATGCGCCGCAGCCGTGCGCGCAAACGCCGAATGTCACCGCGCAAACTGCGG > NC_002947/4162625‑4162909 | gcggtgcggtCACCGACAATCAGCTCCACCCCAACCCCCCGCGCCAGGGCATGGTCAAGTTCGCGCATCACGACCTG‑CGGCGGGTTGAAATACGGCGTACTGATGATGATCTGCGTGCGCGCCACTGCCAGCAAGGCGCACAGCGCCCgg > 2:378951/1‑150 (MQ=255) tgcggtCACCGACAATCAGCTCCACCCCAACCCCCCGCGCCAGGGCATGGTCAAGTTCGCGCATCACGACCTG‑CGGCGGGTTGAAATACGGCGTACTGATGATGATCTGCGTGCGCGCCACTGCCAGCAAGGCGCACAGCGCCCGGTTCa < 2:517607/150‑1 (MQ=255) tCACCGACAATCAGCTCCACCCCAACCCCCCGCGCCAGGGCATGGTCAAGTTCGCGCATCACGACCTG‑CGGCGGGTTGAAATACGGCGTACTGATGATGATCTGCGTGCGCGCCACTGCCAGCAAGGCGCACAGCGCCCGGTTCa > 1:162291/1‑145 (MQ=255) tCACCGACAATCAGCTCCACCCCAACCCCCCGCGCCAGGGCATGGTCAAGTTCGCGCATCACGACCTG‑CGGCGGGTTGAAATACGGCGTACTGATGATGATCTGCGTGCGCGCCACTGCCAGCAAGGCGCACAGCGCCCGGTTCa < 2:162291/145‑1 (MQ=255) tCACCGACAATCAGCTCCACCCCAACCCCCCGCGCCAGGGCATGGTCAAGTTCGCGCATCACGACCTG‑CGGCGGGTTGAAATACGGCGTACTGATGATGATCTGCGTGCGCGCCACTGCCAGCAAGGCGCACAGCGCCCGGTTCAGTGGa < 2:729584/150‑1 (MQ=255) cGACAATCAGCTCCACCCCACCCCCCCGCGCCAGGGCATGGTCAAGTTCGCGCATCACGACCTG‑CGGCGGGTTGAAATACGGCGTACTGATGATGATCTGCGTGCGCGCCACTGCCAGCAAGGCGCACAGCGCCCGGTTCAGTGGATTGc < 1:729936/150‑1 (MQ=255) tCAGCTCCACCCCAACCCCCCGCGCCAGGGCATGGTCAAGTTCGCGCATCACGACCTG‑CGGCGGGTTGAAATACGGCGTACTGATGATGATCTGCGTGCGCGCCACTGCCAGCAAGGCGCACAGCGCCCGGTTCAGTg > 2:638792/1‑138 (MQ=255) tCAGCTCCACCCCAACCCCCCGCGCCAGGGCATGGTCAAGTTCGCGCATCACGACCTG‑CGGCGGGTTGAAATACGGCGTACTGATGATGATCTGCGTGCGCGCCACTGCCAGCAAGGCGCACAGCGCCCGGTTCAGTg < 1:638792/138‑1 (MQ=255) cACCCCAACCCCCCGCGCCAGGGCATGGTCAAGTTCGCGCATCACGACCTG‑CGGCGGGTTGAAATACGGCGTACTGATGATGATCTGCGTGAGCGCCACTGACAGCAAGGCGCACAGCCCCCGTTTCAGTGGATTGCCACGGCCCACAcc > 2:235906/1‑150 (MQ=255) ccAACCCCCCGCGCCAGGGCATGGTCAAGTTCGCGCATCACGACCTGCCAGCGGG‑TGAAATACGGCGTACTGATGATGATCTGCGTGCGCGCCACTGCCAGCAAGGCGCACAGCGCCCGGTTCAGTGGATTGCCACGGCCCACACCcagc < 1:235906/150‑1 (MQ=255) ccAACCCCCCGCGCCAGGGCATGGTCAAGTTCGCGCATCACGACCTG‑CGGCGGGTTGAAATACGGCGTACTGATGATGATCTGCGTGCGCGCCACTGCCAGCAAGGCGCACAGCGCCCGGTTCAGTGGATTGCCACGGCCCACACCcagc > 1:249022/1‑150 (MQ=255) cccGCGCCAGGGCATGGTCAAGTTCGCGCATCACGACCTG‑CGGCGGGTTGAAATACGGCGTACTGATGATGATCTGCGTGCGCGCCACTGCCAGCAAGGCGCACAGCGCCCgg < 2:469834/113‑1 (MQ=255) cccGCGCCAGGGCATGGTCAAGTTCGCGCATCACGACCTG‑CGGCGGGTTGAAATACGGCGTACTGATGATGATCTGCGTGCGCGCCACTGCCAGCAAGGCGCACAGCGCCCgg > 1:469834/1‑113 (MQ=255) cccGCGCCAGGGCATGGTCAAGTTCGCGCATCACGACCTG‑CGGCGGGTTGAAATACGGCGTACTGATGATGATCTGCGTGCGCGCCACTGCCAGCAAGGCGCACAGCGCCCGGTTCAGTGGATTGCCACGGCCCACACCCAGCAGCGGGa > 1:445627/1‑150 (MQ=255) cgcCAGGGCATGGTCAAGTTCGCGCATCACGACCTG‑CGGCGGGTTGAAATACGGCGTACTGATGATGATCTGCGTGCGCGCCACTGCCAGCAAGGCGCACAGCGCCCGGTTCAGTGGATTGCCACGGCCCACACCCAGCAGCGGGATCAc < 2:445627/150‑1 (MQ=255) tCAAGTTCGCGCATCACGACCTG‑CGGCGGGTTGAGATACGGCGTACTGATGATGATCTGCGTGCGCGCCACTGCCAGCAAGGCGCACAGCGCCCGGTTCAGTGGATTGCCACGGCCCACACCCAGCAGCGGGATCACCTGCAGGCCCTGc < 2:249022/150‑1 (MQ=255) aaGTTCGCGCATCACGACCTG‑CGGCGGGTTGAAATACGGCGTACTGATGATGATCTGCGTGCGCGCCACTGCCAGCAAGGCGCACAGCGCCCGGTTCAGTg > 2:720443/1‑101 (MQ=255) aaGTTCGCGCATCACGACCTG‑CGGCGGGTTGAAATACGGCGTACTGATGATGATCTGCGTGCGCGCCACTGCCAGCAAGGCGCACAGCGCCCGGTTCAGTg < 1:720443/101‑1 (MQ=255) ttCGCGCATCACGACCTG‑CGGCGGGTTGAAATACGGCGTACTGATGATGATCTGCGTGCGCGCCACTGCCAGCAAGGCGCACAGCGCCCGGTTCAGTGGATTGCCACGGCCCACACCcag < 2:518229/120‑1 (MQ=255) ttCGCGCATCACGACCTG‑CGGCGGGTTGAAATACGGCGTACTGATGATGATCTGCGTGCGCGCCACTGCCAGCAAGGCGCACAGCGCCCGGTTCAGTGGATTGCCACGGCCCACACCcag > 1:518229/1‑120 (MQ=255) ccTG‑CGGCGGGTTGAAATACGGCGTACTGATGATGATCTGCGTGCGCGCCACTGCCAGCAAGGCGCACAGCGCCCGGTTCAGTGGATTGCCACGGCCCACACCCAGCAGCGGGATCACCTGCAGGCCCTGCCCCGTCACGCTGGCCGGTa < 1:155383/150‑1 (MQ=255) tG‑CGGCGGGTTGAAATACGGCGTACTGATGATGATCTGCGTGCGCGCCACTGCCAGCAAGGCGCACAGCGCCCGGTTCAGTGGATTGCCACGGCCCACACCCAGCAGCGGGATCACCTGCAGGCCCTGCCCCGTCACGCTGGCCGGTAcc > 2:396842/1‑150 (MQ=255) gTTGAAATACGGCGTACTGATGATGATCTGCGTGCGCGCCACTGCCAGCAAGGCGCACAGCGCCCGGTTCAGTGGATTGCCACGGCCCACACCCAGCAGCGGGATCACCTGCAGGCCCTGCCCCGTCACGCTGGCCGGTACCTCGTAGGc > 2:204367/1‑150 (MQ=255) gtgcgCGCCACTGCCAGCAAGGCGCACAGCGCCCGGTTCAGTGGATTGCCACGGCCCACACCCAGCAGCGGGATCACCTGCAGGCCCTGCCCCGTCACGCTGGCCGGTACCTCGTAGGCCATGCGCCGCAGCCGTGCGCGCAAACGCCGa > 1:297175/1‑150 (MQ=255) ccACTGCCAGCAAGGCGCACAGCGCCCGGTTCAGTGGATTGCCACGGCCCACACCCAGCAGCGGGATCACCTGCAGGCCCTGCCCCGTCACGCTGGCCGGTACCTCGTAGGCCATGCGCCGCAGCCGTGCGCGCAAACGCCGAATGTCAc < 1:396842/150‑1 (MQ=255) tGCCAGCAAGGCGCACAGCGCCCGGTTCAGTGGATTGCCACGGCCCACACCCAGCAGCGGGATCACCTGCAGGCCCTGCCCCGTCACGCTGGCCGGTACCTCGTAGGCCATGCGCCGCAGCCGTgcgc > 2:118802/1‑128 (MQ=255) tGCCAGCAAGGCGCACAGCGCCCGGTTCAGTGGATTGCCACGGCCCACACCCAGCAGCGGGATCACCTGCAGGCCCTGCCCCGTCACGCTGGCCGGTACCTCGTAGGCCATGCGCCGCAGCCGTgcgc < 1:118802/128‑1 (MQ=255) gCAAGGCGCAAAGCGCCCGGTTCAGTGGATTGCCACGGCCCACACCCAGCAGCGGGATCACCTGCAGGCCCTGCCCCGTCACGCTGGCCGGTACCTCGTAGGCCATgc < 2:458904/108‑1 (MQ=255) gCAAGGCGCAAAGCGCCCGGTTCAGTGGATTGCCACGGCCCACACCCAGCAGCGGGATCACCTGCAGGCCCTGCCCCGTCACGCTGGCCGGTACCTCGTAGGCCATgc < 2:458674/108‑1 (MQ=255) gCAAGGCGCAAAGCGCCCGGTTCAGTGGATTGCCACGGCCCACACCCAGCAGCGGGATCACCTGCAGGCCCTGCCCCGTCACGCTGGCCGGTACCTCGTAGGCCATgc > 1:458904/1‑108 (MQ=255) gCAAGGCGCAAAGCGCCCGGTTCAGTGGATTGCCACGGCCCACACCCAGCAGCGGGATCACCTGCAGGCCCTGCCCCGTCACGCTGGCCGGTACCTCGTAGGCCATgc > 1:458674/1‑108 (MQ=255) gcgcACAGCGCCCGGTTCAGTGGATTGCCACGGCCCACACCCAGCAGCGGGATCACCTGCAGGCCCTGCCCCGTCACGCTGGCCGGTACCTCGTAGGCCATGCGCCGCAGCCGTGCGCGCAAACGCCGAATGTCACCGCGCAAACTGCgg < 2:308564/150‑1 (MQ=255) | GCGGTGCGGTCACCGACAATCAGCTCCACCCCAACCCCCCGCGCCAGGGCATGGTCAAGTTCGCGCATCACGACCTG‑CGGCGGGTTGAAATACGGCGTACTGATGATGATCTGCGTGCGCGCCACTGCCAGCAAGGCGCACAGCGCCCGGTTCAGTGGATTGCCACGGCCCACACCCAGCAGCGGGATCACCTGCAGGCCCTGCCCCGTCACGCTGGCCGGTACCTCGTAGGCCATGCGCCGCAGCCGTGCGCGCAAACGCCGAATGTCACCGCGCAAACTGCGG > NC_002947/4162625‑4162909 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |