Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,765,973 | C→G | 9.8% | A194G (GCG→GGG) | fpvA → | TonB‑dependent outer membrane ferripyoverdine receptor FpvA |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,765,973 | 0 | C | G | 9.8% | 117.4 / 4.3 | 41 | A194G (GCG→GGG) | fpvA | TonB‑dependent outer membrane ferripyoverdine receptor FpvA |
Reads supporting (aligned to +/- strand): ref base C (16/21); new base G (2/2); total (18/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.76e-01 |
AGACCGCGACCAAACTGCCACTGACCCTGCGCGAAACCCCGCAGGCCGTCACCGTGATCACCCGCCAGCGCATGGACGACCAGTCGATGCGTAGCCTCGACGACGTGGTCCAGGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAGCGAGTACTTTTCCCGCGGCTTTCCCATCAACAACCTGATGTTCGATGGCCTGCCCACCACCTACAACGCCGACTGGGTCGCCGCGGCCGACATGGCGCCCTACGACCGCGTCGAGATCGTG > NC_002947/4765832‑4766109 | aGACCGCGACCAAACTGCCACTGACCCTGCGCGAAACCCCGCAGGCCGTCACCGTGATCACCCGCCAGCGCATGGACGACCAGTCGATGCGTAGCCTCGACGACGTGGTCCAGGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCgg < 1:483743/150‑1 (MQ=255) gcgACCAAACTGCCACTGACCCTGCGCGAAACCCCGCAGGCCGTCACCGTGATCACCCGCCAGCGCATGGACGACCAGTCGATGCGTAGCCTCGACGACGTGGTCCAGGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAAc > 1:669009/1‑150 (MQ=255) gACCAAACTGCCACTGACCCTGCGCGAAACCCCGCAGGCCGTCACCGTGATCACCCGCCAGCGCATGGACGACCAGTCGATGCGTAGCCTCGACGACGTGGTCCAGGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAg > 1:644690/1‑150 (MQ=255) aaCCAAACTGCCACTGACCCTGCGCGAACCCCCGCAGGCCGTCACCGTGATCACCCGCCAGCGCATGGACGACCAGTCGATGCGTAGCCTCGACGACGTGGTCCAGGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAg < 1:388694/149‑1 (MQ=255) aaaCTGCCACTGACCCTGCGCGAAACCCCGCAGGCCGTCACCGTGATCACCCGCCAGCGCATGGACGACCAGTCGATGCGTAGCCTCGACGACGTGGTCCAGGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAGCGAg > 1:72985/1‑150 (MQ=255) cTGCCACTGACCCTGCGCGACACCCCGCAGGCCGTCACCGTGATCACCCGCCAGCGCATGGACGACCAGTCGATGCGTAGCCTCGACGACGTGGCCCAAGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAGCGAGTAc < 1:546387/150‑1 (MQ=255) tGCCACTGACCCTGCGCGACACCCCGCGGGCCGTCACCGTGATCACCCGCCAGCGCATTGACGACCACCCGGTGCGTAGCCTCGACGACGTGGTCCAGGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAGCGAGTACt < 1:202891/150‑1 (MQ=255) cgcgAAACCCCGCAGGCCGTCACCGTGATCACCCGCCAGCGCATGGACGACCAGTCGATGCGTAGCCTCGACGACGTGGTCCAGGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAGCGAGTACTTTTCCCGCGGCttt < 1:486188/150‑1 (MQ=255) cgcgAAACCCCGCAGGCCGTCACCGTGATCACCCGCCAGCGCATGGACGACCAGTCGATGCGTAGCCTCGACGACGTGGTCCAGGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAGCGAGTACTTTTCCCGCGGCttt < 2:342901/150‑1 (MQ=255) gcgAAACCCCGCAGGCCGTCACCGTGATCACCCGCCAGCGCATGGACGACCAGTCGATGCGTAGCCTCGACGACGTGGTCCAGGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAGCGAGTACTTTTCCCGCGGCTTTc > 2:525425/1‑150 (MQ=255) aCCCCGCAGGCCGTCACCGTGATTACCCGCCAGCGCATTGTTGACCAGTCGATTCGTAGCCTCGACGACGTGGTCCAGGCCACTCCTGGTCTGCGCATGTCGGCCTCGCGCCCGGCCAACAGCGAGTACTTTTCCCGCGTCTTTCCCATc < 2:154477/150‑1 (MQ=255) cGCAGGCCGTCACCGTGATCACCCGCCAGCGCATGGACGACCAGGCGATGCGTAGCCTCGACGACGTGGTCCAGGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAGCGAGTACTTTTCCCGCGGCTTTCCCATcaaca > 2:54633/1‑150 (MQ=255) gTCACCGTGATCACCCGCCAGCGCATGGACGACCAGTCGATGCGTAGCCTCGACGACGTGGTCCAGGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAGCGAGTACTTTTCCCGCGGCTTTCCCATCAACAACCTGATg > 1:57807/1‑150 (MQ=255) gTGATCACCCGCCAGCGCATGGACGACCAGTCGATGCGTAGCCTCGACGACGTGGTCCAGGCCCCTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAGCGAGTACTTTTCCCGCGGCTTTCCCATCAACAACCTGATGTTCGAt < 2:12198/150‑1 (MQ=255) tGATCACCCGCCAGCGCATGGACGACCAGTCGATGCGTAGCCTCGACGACGTGGTCCAGGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAGCGAGTACTTTTCCCGCGGCTTTCCCATCAACAACCTGATGTTCGATg > 2:679399/1‑150 (MQ=255) aTCACCCGCCAGCGCATGGACGACCAGTCGATGCGTAGCCTCGACGACGTGGTCCAGGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAGCGAGTACTTTTCCCGCGGCTTTCCCATCAACAACCTGATGTTCGATGGc > 1:640575/1‑150 (MQ=255) cACCCGCCAGCGCATGGACGACCAGTCGATGCGTAGCCTCGACGACGTGGTCCAGGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAGCGAGTACTTTTCCCGCGGCTTTCCCATCAACAACCTGATGTTCGATGGCCt > 2:40646/1‑150 (MQ=255) ccGCCAGCGCATGGACGACCAGTCGATGCGTAGCCTCGACGACGTGGTCCAGGCCACTCCTGGTCTGCGCATGTTGGCCGGGCGCGCGGCCGACatgc < 2:382923/98‑4 (MQ=38) ccGCCAGCGCATGGACGACCAGTCGATGCGTAGCCTCGACGACGTGGTCCAGGCCACTCCTGGTCTGCGCATGTTGGCCGGGCGCGCGGCCGACatgc > 1:382923/1‑95 (MQ=38) cATGGACGACCAGTCGATGCGTAGCCTCGACGACGTGGTCCAGGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAGCGAGTACTTTTCCCGCGGCTTTCCCATCAACAACCTGATGTTCGATGGCCTGCCCACCACCTa < 1:69484/150‑1 (MQ=255) cAGTCGATGCGTAGCCTCGACGACGTGGTCCAGGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAGCGAGTACTTTTCCCGCGGCTTTCCCATCAACAACCTGATGTTCGATGGCCTGCCCACCACCTACAACGCCGAc < 2:72985/150‑1 (MQ=255) aGTCGATGCGTAGCCTCGACGACGTGGTCCAGGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAGCGAGTACTTTTCCCGCGGCTTTCCCATCAACAACCTGATGTTCGATGGCCTGCCCACCACCTACAACGCCGACt < 1:145017/150‑1 (MQ=255) cGATGCGTAGCCTCGACGACGTGGTCCAGGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAGCGAGTACTTTTCCCGCGGCTTTCCCATCAACAACCTGATGTTCGATGGCCTGCCCACCACCTACAACGCCGACTggg < 2:644690/150‑1 (MQ=255) cGATGCGTAGCCTCGACGACGTGGTCCAGGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAGCGAGTACTTTTCCCGCGGCTTTCCCAGCGACAACCTGATGTTCGATGGCCTGCCCACCACCTACAACGCCGACTggg < 2:669009/150‑1 (MQ=255) gCCTCGACGACGTGGTCCAGGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAGCGAGTACTTTTCCCGCGGCTTGCCCATCAACAACCTGATGTTCGATGGCCTGCCCACCACCTACAACGCCGACTGGGTCGCCGCgg < 2:277676/150‑1 (MQ=255) cTCGACGACGTGGTCCAGGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAGCGAGTACTTTTCCCGCGGCTTTCCCATCaacaac < 2:174111/96‑1 (MQ=255) cTCGACGACGTGGTCCAGGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAGCGAGTACTTTTCCCGCGGCTTTCCCATCaacaac > 1:174111/1‑96 (MQ=255) gTGGTCCAGGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAGCGAGTACTTTTCCCGCGGCTTTCCCATCAACAACCTGATGTTCGATGGCCTGCCCACCACCTACAACGCCGACTGGGTCGCCGCGGCCGACATgg > 1:604190/1‑148 (MQ=255) gTGGTCCAGGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAGCGAGTACTTTTCCCGCGGCTTTCCCATCAACAACCTGATGTTCGATGGCCTGCCCACCACCTACAACGCCGACTGGGTCGCCGCGGCCGACATgg < 2:604190/148‑1 (MQ=255) gTGGTCCAGGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAGCGAGTACTTTTCCCGCGGCTTTCCCATCAACAACCTGATGTTCGATGGCCTGCCCACCACCTACAACGCCGACTGGGTCGCCGCGGCCGACATGgcg > 1:625605/1‑150 (MQ=255) tGGTCCAGGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAGCGAGTACTTTTCCCGCGGCTTTCCCATCAACAACCTGATGTTCGATGGCCTGc < 1:396651/105‑1 (MQ=255) tGGTCCAGGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAGCGAGTACTTTTCCCGCGGCTTTCCCATCAACAACCTGATGTTCGATGGCCTGc > 2:396651/1‑105 (MQ=255) ggTCCAGGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAGCGAGTACTTTTCCCGCGGCTTTCCCATCAACAACCTGATGTTCGATGGCCTGCCCACCACCTACAACGCCGACTGGGTCGCCGCGGCCGACATGGCGcc < 1:40646/150‑1 (MQ=255) tCCATGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCCACAGCGGGTACTTTTCCCGCGGCTTTCCCATCAACAACCTGATGTTCGATGGCCTGCCCACCACCTACAACGCCGACTGGGTCGCCGCGGCCGACATGGCGCCCt > 1:209012/1‑150 (MQ=255) tCCAGGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAGCGAGTACTTTTCCCGCGGCTTTCCCATCAACAACCTGATGTTCGATGGCCTGCCCACCACCTACAACGCCGACt < 2:599627/123‑1 (MQ=255) tCCAGGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAGCGAGTACTTTTCCCGCGGCTTTCCCATCAACAACCTGATGTTCGATGGCCTGCCCACCACCTACAACGCCGACt > 1:599627/1‑123 (MQ=255) aCTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAGCGAGTACTTTTCCCGCGGCTTTCCCATCAACAACCTGATGTTCGATGGCCTGCCCACCACCTACAACGCCGACTGGGTCGCCGCGGCCGACATGGCGCCCTACGACcgc < 2:57807/150‑1 (MQ=255) aCTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGACAACAGCGAGTACTTTTCCCGCGGCTTTCCCATCAACAACCTGATGTTCGATGGCCTGCCCACCACCTACAACGCCGACTGGGTCGCCGCGGCCGACATGGCGCCCTACGACcgc > 1:616427/1‑150 (MQ=255) cgcATGTCGGCCGCGCGCCCGGCCAACAGCGAGTACTTTTCCCGCGGCTTTCCCATCAACAACCTGATGTTCGATGGCCTGCCCACCACCTACAACGCCGACTGGGTCGCCGCGGCCGACATGGCGCCCTACGACCGCGTCGAGATCGTg < 2:640575/150‑1 (MQ=255) tgttggCCGGGCGCGCGGCCAACAGCGAGTACTTTTCCCGCGGCTTTCCCATCAACAACCTGATGTTCGATGGCCTGCCCACCACCTACAACGCCGACTgg < 2:219683/97‑1 (MQ=255) tGTTGGCCGGGCGCGCGGCCAACAGCGAGTACTTTTCCCGCGGCTTTCCCATCAACAACCTGATGTTCGATGGCCTGCCCACCACCTACAACGCCGACTgg > 1:219683/1‑101 (MQ=255) | AGACCGCGACCAAACTGCCACTGACCCTGCGCGAAACCCCGCAGGCCGTCACCGTGATCACCCGCCAGCGCATGGACGACCAGTCGATGCGTAGCCTCGACGACGTGGTCCAGGCCACTCCTGGTCTGCGCATGTCGGCCGCGCGCCCGGCCAACAGCGAGTACTTTTCCCGCGGCTTTCCCATCAACAACCTGATGTTCGATGGCCTGCCCACCACCTACAACGCCGACTGGGTCGCCGCGGCCGACATGGCGCCCTACGACCGCGTCGAGATCGTG > NC_002947/4765832‑4766109 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |