Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,865,592 | C→A | 12.5% | R109L (CGC→CTC) | smc ← | chromosome partition protein Smc |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,865,592 | 0 | C | A | 12.5% | 84.2 / 3.3 | 32 | R109L (CGC→CTC) | smc | chromosome partition protein Smc |
Reads supporting (aligned to +/- strand): ref base C (15/13); new base A (2/2); total (17/15) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.39e-01 |
GGGCTTGGCCTCGATCAGCTTGGAGATCATGCCCTGCTCGATGATCGAGTAGCTGCGCGGCCCCAGACCCGTCCCAAGGAAAATATCCGTGATGTCACGCCGGCGGCACTTGGTGCCGTTGAGGTAATAGCTGTTCTGCCCGTCGCGGGTAACCTTGCGGCGGATCGAAATCTCGGCGTAGGCGGCATACTCGCCGACCAGGGTGGTTTCGCTGTTGTCGAACACCAGCTCGATACTGGCCTGGCTGACCGGCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGAC > NC_002947/4865447‑4865741 | gggCTTGGCCTCGATCAGCTTGGAGATCATGCCCTGCTCGATGATCGAGTAGCTGCGCGGCCCCAGACCCGTCCCAAGGAAAATATCCGTTATCTCACGCCGCCGGCACTTGGTGCCGTTGAGGTAATAGCTGTTATGCCCGTCGCGGGt > 2:347287/1‑150 (MQ=255) cTCGATCAGCTTGGAGATCATGCCCTGCTCGATGATCGAGTAGCTGCGCGGCCCCAGACCCGTCCCAAGGAAAATATCCGTGATGTCACGCCGGAGGCACTTGGTGCCGTTGAGGTAATAGCTGTTCTGCCCGTCGCGGGTAACCTTgcg > 1:83143/1‑150 (MQ=255) gATCAGCTTGGAGATCATGCCCTGCTCGATGATCGAGTAGCTGCGCGGCCCCAGACCCGTCCCAAGGAAAATATCCGTGATGTCACGCCGGCGGCACTTGGTGCCGTTGAGGTAATAGCTGTTCTGCCCGTCGCGGGTAACCTTgcggcg > 2:443172/1‑150 (MQ=255) tCAGCTTGGAGATCATGCCCTGCTCGATGATCGAGTAGCTGCGCGGCCCCAGACCCGTCCCAAGGAAAATATCCGTGATGTCACGCCGGCGGCACTTGGTGCCGTTGAGGTAATAGCTGTTCTGCCCGTCGCGGGTAACCTTGCGGCGGa < 1:443172/150‑1 (MQ=255) cccTGCTCGATGATCGAGTAGCTGCGCGGCCCCAGACCCGTCCCAAGGAAAATATCCGTGATGTCACGCCGGCGGCACTTGGTGCCGTTGAGGTAATAGCTGTTCTGCCCGTCGCGGGTAACCTTGCGGCGGATCGAAATCTCGGCGTAg < 1:134101/150‑1 (MQ=255) ccTGCTCGATGATCGAGTAGCTGCGCGGCCCCAGACCCGTCCCAAGGAAAATATCCGTGATGTCACGCCGGCGGCACTTGGTGCCGTTGAGGTAATAGCTGTTCTGCCCGTCGCGGGTAACCTTGCGGCGGATCGAAATCTCg < 1:78873/143‑1 (MQ=255) ccTGCTCGATGATCGAGTAGCTGCGCGGCCCCAGACCCGTCCCAAGGAAAATATCCGTGATGTCACGCCGGCGGCACTTGGTGCCGTTGAGGTAATAGCTGTTCTGCCCGTCGCGGGTAACCTTGCGGCGGATCGAAATCTCg > 2:78873/1‑143 (MQ=255) tCGATGATCGAGTAGCTGCGCGGCCCCAGACCCGTCCCAAGGAAAATATCCGCGATGTCACGCCGGCGGCACTTGGTGCCGTTGAGGTAATAGCTGTTCTGCCCGTCGCGGGTAACCTTGCGGCGGATCGAAATCTCGGCGTAGGCGGCa > 1:341507/1‑150 (MQ=255) gAGTAGCTGCGCGGCCCCAGACCCGTCCCAAGGAAAATATCCGTGATGTCACGCCGGCGGCACTTGGTGCCGTTGAGGTAATAGCTGTTCTGCCCGTCGAGGGTAACCTTGCGGCGGATCGAAATCTCGGCGTAGGCGGCATACTCGCCg > 1:178126/1‑150 (MQ=255) aGTAGCTGCGCGGCCCCAGACCCGTCCCAAGGAAAATATCCGTGATGTCACGCCGGCGGCACTTGGTGCCGTTGAGGTAATAGCTGTTCTGCCCGTCGCGGGTAACCTTGCGGCGGATCGAAATCTCGGCGTAGGCGGCATACTCGCCGa > 1:230980/1‑150 (MQ=255) aGTAGCTGCGCGGCCCCAGACCCGTCCCAAGGAAAATATCCGTGATGTCACGCCGGCGGCACTTGGTGCCGTTGAGGTAATAGCTGTTCTGCCCGTCGCGGGTAACCTTGCGGCGGATCGAAATCTCGGCGTAGGCGGCATACTCGCCGa < 1:456672/150‑1 (MQ=255) gCTGCGCGGCCCCAGACCCGTCCCAAGGAAAATATCCGTGATGTCACGCCGGCGGCACTTGGTGCCGTTGAGGTAATAGCTGTTCTGCCCGTCGCGGGTAACCTTGCGGCGGATCGAAATCTCGGCGTAGGCGGCATACTCGCCGACCAg > 2:514249/1‑150 (MQ=255) cTGCGCGGCCCCAGACCCGTCCCAAGGAAAATATCCGTGATGTCACGCCGGAGGCACTTGGTGCCGTTGAGGTAATAGCTGTTCTGCCCGTCGCGGGTAACCTTGCGGCGGATCGAAATCTCGGCGTAGGCGGCATACTCGCCGACCAgg < 2:83143/150‑1 (MQ=255) cgcgGCCCCAGACCCGTCCCAAGGAAAATATCCGTGATGTCACGCCGGCGGCACTTGGTGCCGTTGAGGTAATAGCTGTTCTGCCCGTCGAGGGTAACCTTGCGGCGGATCGAAATCTCGGCGTAGGCGGCATACTCGCCGACCAGggtg < 2:178126/150‑1 (MQ=255) ccccAGACCCGTCCCAAGGAAAATATCCGTGATGTCACGCCGGCGGCACTTGGTGCCGTGGAGGTAATAGCGGTTCTGCCCGTCGCGGGTAACCTTGCGGCGGATCGACATCTCGGCGTAGGCGGCATACTCGCCGACCACGGGGGTTTc > 2:114061/1‑150 (MQ=255) cGTCCCAAGGAAAATATCCGTGACGTACCCCCGGCGGCACTTGGTGCCGTTGAGGTAATAGCTGTTCTGCCCGTCGCGGGTAACCTTGCGGCGGATCGAAATCTCGGCGTAGGCGGCATACTCGCCGACCAGGGTGGTTTCGCTGTTGTc < 1:564974/150‑1 (MQ=255) cAAGGAAAATATCCGTGATGTCACGCCGGCGGCACTTGGTGCCGTTGAGGTAATAGCTGTTCTGCCCGTCGCGGGTAACCTTGCGGCGGATCGAAATCTCGGCGTAGGCGGCATTCTCGCCGACCAGGGTGGTTTCGCTGTTGTCGAaca > 2:497202/1‑150 (MQ=255) gTGATGTCACGCCGGCGGCACTTGGTGCCGTTGAGGTAATAGCTGTTCTGCCCGTCGCGGGTAACCTTGCGGCGGATCGAAATCTCGGCGTAGGCGGCATACTCGCCGACCAGGGTGGTTTCGCTGTTGTCGAACACCAGCTCGATActg < 2:230980/150‑1 (MQ=255) cggcACTTGGTGCCGTTGAGGGAATATCTGTTCTGCGCGGCGCGTGTAACCTTGCGGCGGATCGAAATCTCGGCGTAGGCGGCATACTCGCCGACCATGGTTGTTTCGCTGTTGTCGAACACCATCGCGATACTGGATTAGCTGCCCgcc > 2:344743/1‑148 (MQ=255) gTGCCGTTGAGGTAATAGCTGTTCTGCCCGTCGCGGGTAACCTTGCGGCGGATCGAAATCTCGGCGTAGGCGGCATACTCGCCGACCAGGGTGGTTTCGCTGTTGTCGAACACCAGCTCGATACTGGCCTGGCTGAACGGCTTGCGGcgc > 2:679515/1‑148 (MQ=255) tGCCGTTGAGGTAATAGCTGTTCTGCCCGTCGCGGGTAACCTTGCGGCGGATCGAAATCTCGGCGTAGGCGGCATACTCGCCGACCAGGGTGGTTTCGCTGTTGTCGAACACCAGCTCGATACTGGCCTGGCTGACCGGCTTGCGGCCAc > 2:374457/1‑150 (MQ=255) gCCGTTGAGGTAATAGCTGTTCTGCCCGTCGCGGGTAACCTTGCGGCGGATCGAAATCTCGGCGTAGGCGGCATACTCGCCGACCAGGGTGGTTTCGCTGTTGTCGAACACCAGCTCGATACTGGCCTGGCTGACCGGCTTGc > 1:305569/1‑143 (MQ=255) gCCGTTGAGGTAATAGCTGTTCTGCCCGTCGCGGGTAACCTTGCGGCGGATCGAAATCTCGGCGTAGGCGGCATACTCGCCGACCAGGGTGGTTTCGCTGTTGTCGAACACCAGCTCGATACTGGCCTGGCTGACCGGCTTGc < 2:305569/143‑1 (MQ=255) gatgcggTAAGAGCTGTTCTGCCAGTCGCGTTTAACCTTGCGGCGGATCGAAATCTCGGCGTAGGCGGCATACTCGCCGACCAGGGTGGTTTGGCTGTTGTCGAACACCAGCTCGATACTGGCCTGGCTGACCGGCTTGCGGCCACTGGa < 1:344743/145‑1 (MQ=255) gTTGAGGTAATAGCTGTTCTGCCCGTCGCGGGTAACCTCGCCGCGGATCGAAATCTCGGCGTAGGCGGCATACTCGCCGACCAGGGTGGTTTCGCTGTTGTCGAACACCAGCTCGATACTGGCCTGGCTGACCGGCTTGCGGCCACTGGa < 1:347287/150‑1 (MQ=255) aaTAGCTGTTCTGCCCGTCGAGGGTAACCTTGCGGCGGATCGAAATCTCGGCGTAGGCGGCATACTCGCCGACCAGGGTGGTTTCGCtg > 1:432716/1‑89 (MQ=255) aaTAGCTGTTCTGCCCGTCGAGGGTAACCTTGCGGCGGATCGAAATCTCGGCGTAGGCGGCATACTCGCCGACCAGGGTGGTTTCGCtg < 2:432716/89‑1 (MQ=255) aTAGCTGTTCTGCCCGTCGCGGGTAACCTTGCGGCGGATCGAAATCTCGGCGTAGGCGGCATACTCGCCGACCAGGGTGGtt > 2:91520/1‑82 (MQ=255) aTAGCTGTTCTGCCCGTCGCGGGTAACCTGGCGGCGGATCGAAATCTCGGCGTAGGCGGCATACTCGCCGACCAGGGTGGtt < 1:91520/82‑1 (MQ=255) gCTGTTCTGCCCGTCGCGGGTAACCTTGCGGCGGATCGAAATCTCGGCGTAGGCGGCATACTCGCCGACCAGGGTGGTTTCGCTGTTGTCGAACACCAGCTCGATACTGGCCTGGCTGACCGGCTTGCGGCCACTGGAGCCGTTGAAGAt < 1:374457/150‑1 (MQ=255) tCGCGGGTAACCTTGCGGCGGATCGAAATCTCGGCGTAGGCGGCATACTCGCCGACCAGGGTGGTTTCGCtgtt < 2:100677/74‑1 (MQ=255) tCGCGGGTAACCTTGCGGCGGATCGAAATCTCGGCGTAGGCGGCATACTCGCCGACCAGGGTGGTTTCGCtgtt > 1:100677/1‑74 (MQ=255) cgGGTAACCTTGCGGCGGATCGAAATCTCGGCGTAGGCGGCATACTCGCCGACCAGGGTGGTTTCGCTGTTGTCGAACACCAGCTCGATACTGGCCTGGCTGACCGGCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGAc < 1:514249/150‑1 (MQ=255) | GGGCTTGGCCTCGATCAGCTTGGAGATCATGCCCTGCTCGATGATCGAGTAGCTGCGCGGCCCCAGACCCGTCCCAAGGAAAATATCCGTGATGTCACGCCGGCGGCACTTGGTGCCGTTGAGGTAATAGCTGTTCTGCCCGTCGCGGGTAACCTTGCGGCGGATCGAAATCTCGGCGTAGGCGGCATACTCGCCGACCAGGGTGGTTTCGCTGTTGTCGAACACCAGCTCGATACTGGCCTGGCTGACCGGCTTGCGGCCACTGGAGCCGTTGAAGATGACGTCGGTCATCGAC > NC_002947/4865447‑4865741 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |