Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,868,161 | C→G | 10.0% | A438G (GCC→GGC) | xdhA → | xanthine dehydrogenase subunit XdhA |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,868,161 | 0 | C | G | 10.0% | 113.9 / 5.9 | 40 | A438G (GCC→GGC) | xdhA | xanthine dehydrogenase subunit XdhA |
Reads supporting (aligned to +/- strand): ref base C (16/20); new base G (2/2); total (18/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.49e-01 |
CATCGAAGACGGTGTGGTCAGCGGTGTGCGTATCGCCTTCGGCGGCATGGCGGCGATTCCCAAGCGCGCCCGCGCCTGTGAGGCGGCGCTGCGCGGCAAGCCGTGGGACCAGGCTGCCATCGAGCGCGCCTGCCAGGCCCTGGCCGAGGACTTCACCCCGCTCAGCGACTTCCGCGCCAGCAAGGAATACCGCCTGCTGACCGCGCAGAACCTGCTGCGCAAGTATTTCATCGAACAGCAAACACCGTACATCGAAACCCGGGTGACCGCTTATGTC > NC_002947/4868024‑4868300 | cATCGAAGACGGTGTGGTCAGCGGTGTGCGTATCGCCTTCGGCGGCATGGCGGCGATTCCCAAGCGCGCCCGCGCCTGTGAGGCGGCGCTGCGCGGCAAGCCGTGGGACCAGGCTGCCATCGAGCGCGCCTGCCAGGCCCTGGCCGAGGa < 2:579319/150‑1 (MQ=255) gAAGACGGTGTGGTCAGCGGTGTGCGTATCGCCTTCGGCGGCATGGCGGCGATTCCCAAGCGCGCCCGCGCCTGTGAGGCGGCGCTGCGCGGCAAGCCGTGGGACCAGGCTGCCATTGAGCGCGCCTGCCAGGCCCTGGCCGAg < 1:396320/144‑1 (MQ=255) gAAGACGGTGTGGTCAGCGGTGTGCGTATCGCCTTCGGCGGCATGGCGGCGATTCCCAAGCGCGCCCGCGCCTGTGAGGCGGCGCTGCGCGGCAAGCCGTGGGACCAGGCTGCCATCGAGCGCGCCTGCCAGGCCCTGGCCGAg > 2:396320/1‑144 (MQ=255) tCAGCGGTGTGCGTATCGCCTTCGGCGGCATGGCGGCGATTCCCAAGCGCGCCCGCGCCTGTGAGGCGGCGCTGCGCGGCAAGCCGTGGGACCAGGCTGCCATCGAGCGCGCCTGCCAGGCCCTGGCCGAGGACTTCACCCCGCTCAGCg > 2:104704/1‑150 (MQ=255) aGCGGTGTGCGTATCGCCTTCGGCGGCATGGCGGCGATTCCCAAGCGCCCCCGCGCCTGTGAGGCGGCGCTGCGCGGCAAGCCGTGGGACCAGGCTGCCATCGAGCGCGCCTGCCAGGCCCTGGCCGAGGACTTCACCCCGCTCAGCGAc < 1:261966/150‑1 (MQ=255) gtgtGCGTATCGCCTTCGGCGGCATGGCGGCGATTCCCAAGCGCGCCCGCGCCTGTGAGGCGGCGCTGCGCGGCAAGCCGTGGGACCAGGCTGCCATCGAGCGCGCCGGCCAGGGCCTGGcaggcgc < 1:249953/127‑7 (MQ=255) gtgtGCGTATCGCCTTCGGCGGCATGGCGGCGATTCCCAAGCGCGCCCGCGCCTGTGAGGCGGCGCTGCGCGGCAAGCCGTGGGACCAGGCTGCCATCGAGCGCGCCGGCCAGGGCCTGGcaggcgc < 1:250144/127‑7 (MQ=255) gtgtGCGTATCGCCTTCGGCGGCATGGCGGCGATTCCCAAGCGCGCCCGCGCCTGTGAGGCGGCGCTGCGCGGCAAGCCGTGGGACCAGGCTGCCATCGAGCGCGCCGGCCAGGGCCTGGcaggcgc > 2:250144/1‑121 (MQ=255) gtgtGCGTATCGCCTTCGGCGGCATGGCGGCGATTCCCAAGCGCGCCCGCGCCTGTGAGGCGGCGCTGCGCGGCAAGCCGTGGGACCAGGCTGCCATCGAGCGCGCCGGCCAGGGCCTGGcaggcgc > 2:249953/1‑121 (MQ=255) gtgCGTATCGCCTTCGGCGGCATGGCGGCGATTCCCAAGCGCGCCCGCGCCTGTGAGGCGGCGCTGCGCGGCAAGCCGTGGGACCAGGCTGCCATCGAGCGCGCCTGCCAGGCCCTGGCCGAGGACTTCACCCCGCTCAGCGACTTCcgc < 1:104704/150‑1 (MQ=255) cGTATCGCCTTCGGCGGCATGGCGGCGATTCCCAAGCGCGCCCGCGCCTGTGAGGCGGCGCTGCGCGGCAAGCCGTGGGACCAGGCTGCCATCGAGCGCGCCTGCCAGGCCCTGGCCGAGGACTTCACCCCGCTCAGCGACTTCCGCGcc < 1:618264/150‑1 (MQ=255) tATCGCCTTCGGCGGCATGGCGGCGATTCCCAAGCGCGCCCGCGCCTGTGAGGCGGCGCTGCGCGGCAAGCCGTGGGACCAGGCTGCCATCGAGCGCGCCTGCCAGGCCCTGGCCGAGGACTTCACCCCGCTCAGCGACTTCCGCGCCAg > 1:664750/1‑150 (MQ=255) aTCGCCTTCGGCGGCATGGCGGCGATTCCCAAGCGCGCCCGCGCCTGTGAGGCGGCGCTGCGCGGCAAGCCGTGGGACCAGGCTGCCATCGAGCGCGCCTGCCAGGCCCTGGCCGAGGACTTCACCCCGCTCAGCGACTTCCGCGCCAGc > 1:418140/1‑150 (MQ=255) tCGCCTTCGGCGGCATGGCGGCGATTCCCAAGCGCGCCCGCGCCTGTGAGGCGGCGCTGCGCGGCAAGCCGTGGGACCAGGCTGCCATCGAGCGCGCCTGCCAGGCCCTGGCCGAGGACTTCACCCCGCTCAGCGACTTCCGCGCCAGCa > 2:106996/1‑150 (MQ=255) cGCCTTCGGCGGCATGGCGGCGATTCCCAAGCGCGCCCGCGCCTGTGAGGCGGCGCTGCGCGGCAAGCCGTGGGACCAGGCTGCCATCGAGCGCGCCTGCCAGGCCCTGGCCGAGGCCTCCACCCCGCTCAGCGACTTCCGCGCCAGCaa < 1:700459/150‑1 (MQ=255) cGCCTTCGGCGGCATGGCGGCCATTCCCAAGCGCGCCCGCGCCTGTGAGGCGGCGCTGCGCGGCAAGCCGTGGGACCAGGCTGCCATCGAGCGCGCCTGCCAGGCCCTGGCCGAGGACTTCACCCCGCTCCGCGACTTCCGCGCCAGCaa < 2:387005/150‑1 (MQ=255) gcggcATGGCGGCGATTCCCAAGCGCGCCCGCGCCTGTGAGGCGGCGCTGCGCGGCAAGCCGTGGGACCAGGCTGCCATCGAGCGCGCCTGCCAGGCCCTGGCCGAGGACTTCACCCCGCTCAGCGACTTCCGCGCCAGCAAGGAATAcc < 2:647638/150‑1 (MQ=255) ggcATGGCGGCGATTCCCAAGCGCGCCCGCGCCTGTGAGGCGGCGCTGCGCGGCAAGCCGTGGGACCAGGCTGCCATCGAGCGCGCCTGCCAGGCCCTGGCCGAGGACTTCACCCCGCTCAGCGACTTCCGCGCGAGCAAGGaagagctc < 2:749521/150‑7 (MQ=255) ggcATGGCGGCGATTCCCAAGCGCGCCCGCGCCTGTGAGGCGGCGCTGCGCGGCAAGCCGTGGGACCAGGCTGCCATCGAGCGCGCCTGCCAGGCCCTGGCCGAGGACTTCACCCCGCTCAGCGACTTCCGCGCCAGCAAGGAATACCGc < 1:106996/150‑1 (MQ=255) cggcgATTCCCAAGCGCGCCCGCGCCTGTGAGGCGGCGCTGCGCGGCAAGCCGTGGGACCAGGCTGCCATCGAGCGCGCCTGCCAGGCCCTGGCCGAGGACTTCACCCCGCTCAGCGACTTCCGCGCCAGCAAGGAATACCGCCTGCTGa > 1:3996/1‑150 (MQ=255) cAAGCGCGCCCGCGCCTGTGAGGCGGCGCTGCGCGGCAAGCCGTGGGACCAGGCTGCCATCGAGCGCGCCTGCCAGGCCCTGGCCGAGGACTTCACCCCGCTCAGCGACTTCCGCGCCAGCAAGGAATACCGCCTGCTGACCGCGCAGaa > 1:283663/1‑150 (MQ=255) aaGCGCGCCCGCGCCTGTGAGGCGGCGCTGCGCGGCAAGCCGTGGGACCAGGCTGCCATCGAGCGCGCCTGCCAGGCCCTGGCCGAGGACTTCACCCCGCTCAGCGACTTCCGCGCCAGCAAGGAATACCGCCTGCTGACCGCGCAGAAc > 2:156354/1‑150 (MQ=255) gAGGCGGCGCTGCGCGGCAAGCCGTGGGACCAGGCTGCCATCGAGCGCGCCTGCCAGGCCCTGGCCGAGGACTTCACCCCGCTCAGCGACTTCCGCGCCAGCAAGGAATACCGCCTGCTGACCGCGCAGAACCTGCTGCGCAAGTATTTc < 2:3996/150‑1 (MQ=255) ggcggcGCTGCGCGGCAAGCCGTGGGACCAGGCTGCCATCGAGCGCGCCTGCCAGGCCCTGGCCGAGGACTTCACCCCGCTCAGCGACTTCCGCGCCAGCAAGGAATACCGCCTGCTGACCGCGCAGAACCTGCTGCGCAAGTATTTCAt < 1:327989/150‑1 (MQ=255) gcgcTGCGCGGCAAGCCGTGGGACCAGGCTGCCATCGAGCGCGCCTGCCAGGCCCTGGCCGAGGACTTCACCCCGCTCAGCGACTTCCGCGCCAGCAAGGAATACCGCCTGCTGACCGCGCAGAACCTGCTGCGCAAGTATTTCATCGaa < 1:70140/150‑1 (MQ=255) gcgGCAAGCCGTGGGACCAGGCTGCCATCGAGCGCGCCTGCCAGGCCCTGGCCGAGGACTTCACCCCGCTCAGCGACTTCCGCGCCAGCAAGGAATACCGCCTGCTGACCGCGCAGAACCTGCTGCGCAAGTATTTCATCGAACAGCaaa < 1:82995/150‑1 (MQ=255) ggCAAGCCGTGGGACCAGGCTGCCATCGAGCGCGCCTGCCAGGCCCTGGCCGAGGACTTCACCCCGCTCAGCGACTTCCGCGCCAGCAAGGAATACCGCCTGCTGACCGCGCAGAACCTGCTGCGCAAGTATTTCATCGAACAGCAAaca > 2:335511/1‑150 (MQ=255) gCAAGCCGTGGGACCAGGCTGCCATCGAGCGCGCCTGCCAGGCCCTGGCCGAGGACTTCACCCCGCTCAGCGACTTCCGCGCCAGCAAGGAATACCGCCTGCTGACCGCGCAGAACCTGCTGCGCAAGTATTTCATCGAACAGCAAacac > 2:418404/1‑150 (MQ=255) cAAGCCGTGGGACCAGGCTGCCATCGAGCGCGCCTGCCAGGCCCTGGCCGAGGACTTCACCCCGCTCAGCGACTCCCGCGCCAGCAAGGAATACCGCCTGCTGACCGCGCAGAACCTGCTGCGCAAGTATTTCATCGAACAGCAAACAcc < 2:701125/150‑1 (MQ=255) ggACCAGGCTGCCATCGAGCGCGCCTGCCAGGCCCTGGCCGAGGACTTCACCCCGCTCAGCGACTTCCGCGCCAGCAAGGAATACCGCCTGCTGACCGCGCAGAACCTGCTGCGCAAGTATTTCATCGAACAGCAAACGTCGTACATCGa > 1:679298/1‑150 (MQ=255) aCCAGGCTGCCATCGAGCGCGCCTGCCAGGCCCTGGCCGAGGACTTCACCCCGCTCAGCGACTTCCGCGCCAGCAAGGAATTCCGCCTGCTGACCGCGCAGAACCTGCTGCGCAAGTATTTCATCGAACAGCAAACACCGTACATCGaaa > 1:577818/1‑150 (MQ=255) cAGGCTGCCATCGAGCGCGCCTGCCAGGCCCTGGCCGAGGACTTCACCCCGCTCCGCGACTTCCGCGCCAGCAAGGAATACCGCCTGCTGACCGCGCAGAACCTGCTGCGCAAGTATTTCATCGAACAGCAAACACCGTACATCGAAAcc > 1:273506/1‑150 (MQ=255) aGGCTGCCATCGAGCGCGCCTGCCAGGCCCTGGCCGAGGACTTCACCCCGCTCAGCGACTTCCGCGCCAGCAAGGAATACCGCCTGCTGACCGCGCAGAACCTGCTGCGCAAGTATTTCATCGAACAGCAAACACCGTACATCGAAAccc < 2:283663/150‑1 (MQ=255) ggCTGCCATCGCCCGCGCCTTCTAGGCCCTGGCCGAGGACTTCACCCCGCTCAGCGACTTCCGCGCCAGCAAGGAATACCGCCTGCTGACCGCGCAGAACCTGCTGCGCAAGTATTTCATCGAACAGCAAACACCGTACATCGAAACCCg < 2:418140/150‑1 (MQ=255) gCTGCCATCGAGCGCGCCTGCCAGGCCCTGGCCGAGGACTTCACCCCGCTCAGCGACTTCCGCGCCAGCAAGGAATACCGCCTGCTGACCGCGCAGAACCTGCTGCGCAAGTATTTCATCGAACAGCAAACACCGTACATCGAAACCCgg < 2:577818/150‑1 (MQ=255) ccATCGAGCGCGCCTGCCAGGCCCTGGCCGAGGACTTCACCCCGCTCAGCGACTTCCGCGCCAGCAAGGAATACCGCCTGCTGACCGCGCAGAACCTGCTGCGCAAGTATTTCATCGAACAGCAAACACCGTACATCGAAACCCgg > 1:579188/1‑146 (MQ=255) ccATCGAGCGCGCCTGCCAGGCCCTGGCCGAGGACTTCACCCCGCTCAGCGACTTCCGCGCCAGCAAGGAATACCGCCTGCTGACCGCGCAGAACCTGCTGCGCAAGTATTTCATCGAACAGCAAACACCGTACATCGAAACCCgg < 2:579188/146‑1 (MQ=255) gcCTGCCAGGCCCTGGCCGAGGACTTCACCCCGCTCAGCGACTTCCGCGCCAGCAAGGAATACCGCCTGCTGACCGCGCAGAACCTGCTGCGCAAGTATTTCATCGAACAGCAAACACCGTACATCGAAACCCGGGTGACCGCTTATGTc > 2:531358/1‑150 (MQ=255) cAGGCCCTGGCCGAGGACTTCACCCCGCTCAGCGACTTCCGCGCCAGCAAGGAATACCGCCTGCTGACCGCGCAGAACCTGCTgcgc > 1:579870/1‑87 (MQ=255) cAGGCCCTGGCCGAGGACTTCACCCCGCTCAGCGACTTCCGCGCCAGCAAGGAATACCGCCTGCTGACCGCGCAGAACCTGCTgcgc < 2:579870/87‑1 (MQ=255) | CATCGAAGACGGTGTGGTCAGCGGTGTGCGTATCGCCTTCGGCGGCATGGCGGCGATTCCCAAGCGCGCCCGCGCCTGTGAGGCGGCGCTGCGCGGCAAGCCGTGGGACCAGGCTGCCATCGAGCGCGCCTGCCAGGCCCTGGCCGAGGACTTCACCCCGCTCAGCGACTTCCGCGCCAGCAAGGAATACCGCCTGCTGACCGCGCAGAACCTGCTGCGCAAGTATTTCATCGAACAGCAAACACCGTACATCGAAACCCGGGTGACCGCTTATGTC > NC_002947/4868024‑4868300 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |