Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,004,649 | C→T | 11.8% | A318V (GCA→GTA) | PP_4410 → | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,004,649 | 0 | C | T | 11.8% | 83.0 / 3.2 | 34 | A318V (GCA→GTA) | PP_4410 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base C (15/15); new base T (2/2); total (17/17) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.32e-01 |
GGAATCGTTAGATATCGCAAATATGGAATCAGCAGCCTTTCATGCGAAAGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTCGAAGTTTAAGTACCCCTCAACACCT > NC_002947/5004519‑5004797 | ggAATCGTTAGATATCGCAAATATGGAATCAGCAGCCTTTCATGCGAAAGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTAttt > 1:336368/1‑146 (MQ=255) ggAATCGTTAGATATCGCAAATATGGAATCAGCAGCCTTTCATGCGAAAGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTAttt < 2:336368/146‑1 (MQ=255) ttAGATATCGCAAATATGGAATCAGCAGCCTTTCATGCGAAAGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAAc > 2:666400/1‑150 (MQ=255) ttAGATATCGCAAATATGGAATCAGCAGCCTTTCATGCGAAAGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAAc > 1:461086/1‑150 (MQ=255) aGATATCGCAAATATGGAATCAGCAGCCTTTCATGCGAAAGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCa < 1:538358/150‑1 (MQ=255) gATATCGCAAATATGGAATCAGCAGCCTTTCATGCGAAAGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGCTGACTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAg < 2:590479/150‑1 (MQ=255) cGCAAATATGGAATCAGCAGCCTTTCATGCGAAAGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGaa < 1:666400/150‑1 (MQ=255) gcagcCTTTCATGCGAAAGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCa > 2:713446/1‑150 (MQ=255) aaaGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGa > 2:594552/1‑150 (MQ=255) gTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGTAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGaa > 2:221489/1‑135 (MQ=255) gTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGTAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGaa > 2:221721/1‑135 (MQ=255) gTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGTAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGaa < 1:221721/135‑1 (MQ=255) gTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGTAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGaa < 1:221489/135‑1 (MQ=255) aGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCaa < 2:461086/150‑1 (MQ=255) attcacattcaTCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACttattt < 2:243078/144‑1 (MQ=255) attcacattcaTCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACttattt > 1:243078/1‑144 (MQ=255) tcaAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCaa > 2:57632/1‑120 (MQ=255) tcaAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCaa < 2:145757/120‑1 (MQ=255) tcaAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCaa < 1:57632/120‑1 (MQ=255) tcaAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCaa > 1:145757/1‑120 (MQ=255) gCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCtt > 1:592093/1‑150 (MQ=255) gCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCtt < 2:592093/150‑1 (MQ=255) ggATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATgg > 1:494078/1‑95 (MQ=255) ggATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATgg < 2:494078/95‑1 (MQ=255) cAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCt < 2:751691/150‑1 (MQ=255) tGGATGATTGGCTGAATGCAGAGCGTGTCTGGTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTCGAAGTTTa > 1:19673/1‑150 (MQ=255) gatTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGa < 1:88761/118‑1 (MQ=255) gatTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGa > 2:88761/1‑118 (MQ=255) atTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTCGAAGTTTAAGTAcc < 1:713446/150‑1 (MQ=255) cTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCttt < 2:423953/117‑1 (MQ=255) cTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCttt > 1:423953/1‑117 (MQ=255) tGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGagaa < 2:385974/71‑1 (MQ=255) tGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGagaa > 1:385974/1‑68 (MQ=255) gCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTCGAAGTTTAAGTACCCCTCAACACCt > 2:605046/1‑150 (MQ=255) | GGAATCGTTAGATATCGCAAATATGGAATCAGCAGCCTTTCATGCGAAAGTATAGCCGACTATAGGCTTGACATTCACATTCATCAAGGGCTGGATATATTCAAGGCAGCAATGGATGATTGGCTGAATGCAGAGCGTGCTTATTTGAGGCATCAACCAGTTGAAAAATTAAAAGCACGCAGAATGGCAATCGGGAAAATCAATATATACTTATTTATATATCTACCCCTTTGGATCTTTCAAAACCCCCTGTCGAAGTTTAAGTACCCCTCAACACCT > NC_002947/5004519‑5004797 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |