Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,073,997 | T→C | 9.5% | H58R (CAC→CGC) | PP_5691 ← | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,073,997 | 0 | T | C | 9.5% | 113.2 / 2.7 | 42 | H58R (CAC→CGC) | PP_5691 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (17/21); new base C (2/2); total (19/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.56e-01 |
GCTCATCACTTCCGATGATAACTTGATGTACTCGTTCCATTCTCCACCCATCGCTCTTGCTCATCCATGCGGGAATCACGGCGTGAACTTCGACGATGGCGAACTCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGTGCTCGCTGTCTACCATCAAGGTGAACTCGGTACAACGACCGTCCTGCTCGCTGCGAATAGACAGGTGATACCAATGCGTCCGCAACATCCTAGTTACAGCATGCCAGTGAGCACGGCCATCACCGAAAAGACCAGGGACGCCAA > NC_002947/5073857‑5074141 | gCTCATCACTTCCGATGATAACTTGATGTACTCGTTCCATTCTCCACCCATCGCTCTTGCTCATCCATGCGGGAATCACGGCGTGAACTTCGACGATGGCGAACTCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGTGCTCGCTGt < 1:70692/150‑1 (MQ=255) ttCCGATGATAACTTGATGTACTCGTTCCATTCTCCACCCATCGCTCTTGCTCATCCATGCGGGAATCACGGCGTGAACTTCGACGATGGCGAACTCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGTGCTCGCt > 2:388278/1‑139 (MQ=255) ttCCGATGATAACTTGATGTACTCGTTCCATTCTCCACCCATCGCTCTTGCTCATCCATGCGGGAATCACGGCGTGAACTTCGACGATGGCGAACTCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGTGCTCGCt < 1:388278/139‑1 (MQ=255) ttCCGATGATAACTTGATGTACTCGTTCCATTCTCCACCCATCGCTCTTGCTCATCCATGCGGGAATCACGGCGTGAACTTCGACGATGGCGAACTCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGTGCTCGCTGTCTACCATCa > 2:326759/1‑150 (MQ=255) ttCCGATGATAACTTGATGTACTCGTTCCATTCTCCACCCATCGCTCTTGCTCATCCATGCGGGAATCACGGCGTGAACTTCGACGATGGCGAACTCGGCATCTTCGCTAATGAGACATTCTTGGAGCTTGTGCTCGCTGTCTACCATCa > 2:543200/1‑150 (MQ=255) tCCGATGATAACTTGATGTACTCGTTCCATTCTCCACCCATCGCTCTTGCTCATCCATGCGGGAATCACGGCGTGAACTTCGACGATGGCGAACTCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGTGCTCGCTGTCTACCATCaa < 2:76134/150‑1 (MQ=255) ccGATGATAACTTGATGTACTCGTTCCATTCTCCACCCATCGCTCTTGCTCATCCATGCGGGAATCCCGGTGTTAACTTCGACGATGGCGAACTCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGTGCTCGCTGTCTACCATCAAg < 1:654672/150‑1 (MQ=255) ttGATGTACTCGTTCCATTCTCCACCCATCGCTCTTGCTCATCCATGCGGGAATCACGGCGTGCACTTCGACGATGGCGAATTCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGTGCTCGCTGTCTACCATCAAGGTGAACTCGGt < 2:273989/150‑1 (MQ=255) ttGATGTACTCGTTCCATTCTCCACCCATCGCTCTTGCTCATCCATGCGGGAATCACGGCGTGAACTTCGACGATGGCGAACTCGGCATCTTGGCTAATGAGGCATTCTTGGAGCTTGTGCTCGCTGTCTACCATCAAGGTGAACTCGGt < 2:742202/150‑1 (MQ=255) tGTACTCGTTCCATTCTCCACCCATCGCTCTTGCTCATCCATGCGGGAATCACGGCGTGAACTTCGACGATGGCGAACTCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGTGCTCGCTGTCTACCATCAAGGTGAACTCGGTACaa > 2:438282/1‑150 (MQ=255) cttACTCGTTCCATTCTCCACCCATCGCTCTTGCTCATCCATGCGGGAATCACGGCGTGAACTTCGACGATGGCGAACGCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGCGCTCGCTGTCTACCATCAAGGTGAACTCGGTACaa < 1:15875/148‑1 (MQ=255) ccTCGTTCCATTCTCCACCCATCGCTCTTGCTCATCCATGCGGGAATCACGGCGTGAACTTCGACGATGGCGAACTCGGCATCTTGGCTAATGAGACATTCTTGGAGATTGCGCTAGCTGTCTACCATCAAGGTGAACTCGGTGCAAccg > 2:15875/2‑148 (MQ=255) aCTCGTTCCATTCTCCACCCATCGCTCTTGCTCATCCATGCGGGAATCACGGCGTGAACTTCGACGATGGCGAACTCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGTGCTCGCTGTCTACCATCAAGGTGAACTCGGTACAACGa > 1:345440/1‑150 (MQ=255) aCTCGTTCCATTCTCCACCCATCGCTCTTGCTCATCCATGCGGGAATCACGGCGTGAACTTCGACGATGGCGAACTCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGCGCTCGCTGTCTACCATCAAGGTGAACTCGGTACaa > 2:15703/1‑147 (MQ=255) aCTCGTTCCATTCTCCACCCATCGCTCTTGCTCATCCATGCGGGAATCACGGCGTGAACTTCGACGATGGCGAACTCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGCGCTCGCTGTCTACCATCAAGGTGAACTCGGTACaa < 1:15703/147‑1 (MQ=255) ttCCATTCTCCACCCATCGCTCTTGCTCATCCATGCGGGAATCACGGCCTGAACTTCGACGATGGCGAACTCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGTGCTCGCTGTCTACCATCAAGGTGAACTCGGTACAACGACCGTc < 1:288344/150‑1 (MQ=255) aTTCTCCACCCATCGCTCTTGCTCATCCATGCGGGAATCACGGCGTGAACTTCGACGATGGCGAACTCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGTGCTCGCTGTCTACCATCAAGGTGAACTCGGTACAACGACCGTCCTGc > 1:454539/1‑150 (MQ=255) ttCTCCACCCATCGCTCTTGCTCATCCATGCGGGAATCACGGCGTGAACTTCGACGATGGCGAACTCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGTGCTCGCTGTCTACCATCAAGGTGAACTCGGTACAACGACCGTCCTGCt > 2:268748/1‑150 (MQ=255) tcCACCCATCGCTCTTGCTCATCCATGCGGGAATCACGGCGTGAACTTCGACGATGGCGAACTCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGTGCTCGCTGTCTACCATCAAGGTGAACTCGGTACAACGACCGTCCTGCTCGc > 2:636367/1‑150 (MQ=255) aCCCATCGCTCTTGCTCATCCATGCGGGAATCACGGCGTGAACTTCGACGATGGCGAACTCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGTGCTCGCTGTCTACCATCAAGGTGAACTCGGTACAACGACCGTCCTGCTCGCTGc < 1:350276/150‑1 (MQ=255) ccATCGCTCTTGCTCATCCATGCGGGAATCACGGCGTGAACTTCGACGATGGCGAACTCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGTGCTCGCTGTCTACCATCAAGGTGAACTCGGTACAACGACCGTCCTGCTCGCTGCGa > 1:713815/1‑150 (MQ=255) cATCGCTCTTGCTCATCCATGCGGGAATCACGGCGTGAACTTCGACGATGGCGAACTCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGTGCTCGCTGTCTACCATCAAGGTGAACTCGGTACAACGACCGTCCTGCTCGCTGCGaa < 2:713815/150‑1 (MQ=255) ctTGCTCATCCATGCGGGAATCACGGCGTGAACTTCGACGATGGCGAACTCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGTGCTCGCTGTATACCTTCAAGGTGAACTCGGTACAACGACCGTCCTGCTCGCTGCGAATAGACAg > 2:20060/1‑150 (MQ=255) tGCTCATCCATGCGGGAATCACGGCGTGAACTTCGACGATGGCGAACTCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGTGCTCGCTGTCTACCATCAAGGTGAACTCGGTACAACGACCGTCCTGCTCGCTGCGAATAGACAGGt < 1:636367/150‑1 (MQ=255) aTGCGGGAATCACGGCGTGAACTTCGACGATGGCGAACTCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGTGCTCGCTGTCTACCATCAAGGTGAACTCGGTACAACGACCGTCCTGCTCGCTGCGAATAGACAGGTGATACCAAt < 2:118127/150‑1 (MQ=255) aTGCGGGAATCACGGCGTGAACTTCGACGATGGCGAACTCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGTGCTCGCTGTCTACCATCAAGGTGAACTCGGTACAACGACCGTCCTGCTCGCTGCGAATAGACAGGTGATACCAAt < 1:268748/150‑1 (MQ=255) gctggAATCACGGCGTGAACTTCGACGATGGCGAACTCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGTGCTCGCTGTCTACCATCAAGGTGAACTCGGTACAACGACCGTCCTGCTCGCTGCGAATAGACAGGTGATACCAATGc < 2:345440/147‑1 (MQ=255) gCGGGAATCACGGCGTGAACTTCGACGATGGCGAACTCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGTGCTCGCTGTCTACCATCAAGGTGAACTCGGTACAACGACCGTCCTGCTCGCTGCGAATAGACAGGTGATACCAATGc < 2:713276/150‑1 (MQ=255) tCACGGCGTGAACTTCGACGATGGCGAACTCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGTGCTCGCTGTCTACCATCAAGGTGAACTCGGTACAACGACCGTCCTGCTCGCTGCGAATAGACAGGTGATACCAATGCGTCCGCa > 2:466120/1‑150 (MQ=255) aCGGCGTGAACTTCGACGATGGCGAACTCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGTGCTCGCTGTCTACCATCAAGGTg > 2:97491/1‑87 (MQ=255) aCGGCGTGAACTTCGACGATGGCGAACTCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGTGCTCGCTGTCTACCATCAAGGTg < 1:97491/87‑1 (MQ=255) cgaTGGCGAACTCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGTGCTCGCTGTCTACCATCAAGGTGAACTCGGTACAACGACCGTCCTGCTCGCTGCGAATAGACAGGTGATACCAATGCGTCCGCAACATCCTAGTTACAGCAt < 1:481786/150‑1 (MQ=255) cGAACTCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGTGCTCGCTGTCTACCATCAAGGTGAACTCGGTACAACGACCGTCCTGCTCGCTGCGAATAGACAGGTGATACCAATGCCTCCTCAACATCCTAGTTACAGCATGCCAGt < 1:20060/150‑1 (MQ=255) aaCTCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGTGCTCGCTGTCTACCATCAAGGTGAACTCGGTACAACGACCGTCCTGCTCGCTGCGAATAGACAGGTGATACCAATGCGTCCGCAACATCCTAGTTACAGCATGCCAGTGa < 1:438282/150‑1 (MQ=255) aaTGAGACATTCTTGGAGCTTGTGCTCGCTGTCTACCATCAAGGTGAACTAGATCCCACAAGCGTCCTGCCGGCAGGGATTAGACAGGTGATACCAATGCGTCCGCAACATCCTAGTTACAGCATGCCAGTGAGCACGGCCATCACCGaa > 1:280196/1‑150 (MQ=255) tGAGACATTCTTGGAGCTTGTGCTCGCTGTCTACCATCAAGGTGAACTCGGTACaa < 2:454694/56‑1 (MQ=255) tGAGACATTCTTGGAGCTTGTGCTCGCTGTCTACCATCAAGGTGAACTCGGTACaa > 1:454694/1‑56 (MQ=255) aCATTCTTGGAGCTTGTGCTCGCTGTCTACCATCAAGGTGAACTCGGTACAACGACCGTCCTGCTCGCTGCGAATAGACAGGTGATACCAATGCGTCCGCAACATcc < 1:643477/107‑1 (MQ=255) aCATTCTTGGAGCTTGTGCTCGCTGTCTACCATCAAGGTGAACTCGGTACAACGACCGTCCTGCTCGCTGCGAATAGACAGGTGATACCAATGCGTCCGCAACATcc > 2:643477/1‑107 (MQ=255) cATTCTTGGAGCTTGTGCTCGCTGTCTACCATCAAGGTGAACTCGGTACAACGACCGTCCTGCTCGCTGCGAATAGACAGGTGATACCAATGCGTCCGCAACATCCTAGTTACAGCATGCCAGTGAGCACGGCCATCACCGAAAAGACCa < 1:466120/150‑1 (MQ=255) gCTTGTGCTCGCTGTCTACCATCAAGGTGAACTCGGTACAACGACCGTCCTGCTCGCTGCGAATAGACAGGTGATACCAATGCGTCCGCAACATCCTAGTTACAGCATGCCAGTGAGCACGTCCATCACCGAAAAGACCAGGGACGCCaa > 1:565746/1‑150 (MQ=255) gCTTGTGCTCGCTGTCTACCATCAAGGTGAACTCGGTACAACGACCGTCCTGCTCGCTGCGAATAGACAGGTGATACCAATGCGTCCGCAACATCCTAGTTACAGCATGCCAGTGAGCACGGCCATCACCGAAAAGACCAGGGACGCCaa > 1:2265/1‑150 (MQ=255) | GCTCATCACTTCCGATGATAACTTGATGTACTCGTTCCATTCTCCACCCATCGCTCTTGCTCATCCATGCGGGAATCACGGCGTGAACTTCGACGATGGCGAACTCGGCATCTTGGCTAATGAGACATTCTTGGAGCTTGTGCTCGCTGTCTACCATCAAGGTGAACTCGGTACAACGACCGTCCTGCTCGCTGCGAATAGACAGGTGATACCAATGCGTCCGCAACATCCTAGTTACAGCATGCCAGTGAGCACGGCCATCACCGAAAAGACCAGGGACGCCAA > NC_002947/5073857‑5074141 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |