Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,284,507 | C→G | 14.3% | S288R (AGC→AGG) | PP_4658 → | methyl‑accepting chemotaxis protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,284,507 | 0 | C | G | 14.3% | 74.8 / 6.0 | 28 | S288R (AGC→AGG) | PP_4658 | methyl‑accepting chemotaxis protein |
Reads supporting (aligned to +/- strand): ref base C (13/11); new base G (2/2); total (15/13) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.98e-01 |
GTACGCCAGTTCCGCGACGCGGTTGCCAACATCACCACCTCGCGCGCCGAAATGACCGTGCAGGGCGCCGACATCGTCAAGCGCAGTGACGCGTTGTACCAGATCCAGCTGGAGCGCCGTGACATCGAGAGCACCCAGGCCCGCAGCCTGCAGGCCATCGCCACACTGTTGGCGCTGCTGGTCGGCGTGCTGGCGGCGGTGCTGATCACCCGCCAGATCACGCGCCCGTTGCAAGACACCCTGGTGGCCGTGGAGAAAATCGCCAGTGGCGACCTTACCCAACACATGCGC > NC_002947/5284361‑5284651 | gTACGCCAGTTCCGCGACGCGGTTGCCAACATCACCACCTCGCGCGCCGAAATGACCGTGCAGGGCGCCGACATCGTCAAGCGCAGTGACGCGTTGTACCAGATCCAGCTGGAGCGCCGTGACATCGAGAGCACCCAGGCCTGCAGGCTg > 1:510171/1‑150 (MQ=255) cAGTTCCGCGACGCGGTTGCCAACATCACCACCTCGCGCGCCGAAATGACCGTGCAGGGCGCCGACATCGTCAAGCGCAGTGACGCGTTGTACCAGATCCAGCTGGAGCGCCGTGACATCGAGAGCACCCAGGCCCGCAGCCTGCAGGcc > 1:174137/1‑150 (MQ=255) aGTTCCGCGACGCGGTTGCCAACATCACCACCTCGCGCGCCGAAATGACCGTGCAGGGCGCCGACCTCTTCAAGCGCAGTGACGCGTTGTACCAGATCCAGCTGGAGCGCCGTGACATCGAGAGCACCCAGGCCTGCAGGCTGCGGGcct < 1:422111/150‑2 (MQ=255) ttCCGCGACGCGGTTGCCAACATCACCACCTCGCGCGCCGAAATGACCGTGCAGGGCGCCGACATCGTCAAGCGCAGTGACGCGTTGTACCAGATCCAGCTGGAGCGCCGTGACATCGAGAGCACCCAGGCCTGCAGGCTGCGGGcctgg < 2:510171/150‑4 (MQ=255) ccGCGACGCGGTTGCCAACATCACCACCTCGCGCGCCGAAATGACCGTGCAGGGCGCCGACATCGTCAAGCGCAGTGACGCGTTGTACCAGATCCAGCTGGAGCGCCGTGACATCGAGAGCACCCAGGCCCGCAGCCTGCAGGCCATCGc < 1:615501/150‑1 (MQ=255) aTCACCACCTCGCGCGCCGAAATGACCGTGCAGGGCGCCGACATCGTCAAGCGCAGTGACGCGTTGTACCAGATCCAGCTGGAGCGCCGTGACATCGAGAGCACCCAGGCCCGCAGCCTGCAGGCCATCGCCACACTGTTGGCGctgctg > 2:382339/1‑150 (MQ=255) caccacCTCGCGCGCCGAAATGACCGTGCAGGGCGCCGACATCGTCAAGCGCAGTGACGCGTTGTACCAGATCCAGCTGGAGCGCCGTGACATCGAGAGCACCCAGGCCCGCAGCCTGCAGGCCATCGCCACACTGTTGGCGCTGCTGGt > 2:284885/1‑150 (MQ=255) cgcCGAAATGACCGTGCAGGGCGCCGACATCGTCAAGCGCAGTGACGCGTTGTACCAGATCCAGCTGGAGCGCCGTGACATCGAGAGCACCCAGGCCCGCAGCCTGCAGGCCATCGCCACACTGTTGGCGCTGCTGGTCGGCGTGCTggc > 2:703315/1‑150 (MQ=255) ccGAAATGACCGTGCAGGGCGCCGACATCGTCAAGCGCAGTGACGCGTTGTACCAGATCCAGCTGGAGCGCCGTGACATCGAGAGCACCCAGGCCCGCAGCCTGCAGGCCATCGCCACACTGTTGGCGCTGCTGGTCGGCGTGCTggcgg < 2:553024/150‑1 (MQ=255) tGACCGTGCAGGGCGCCGACATCGTCAAGCGCAGTGACGCGTTGTACCAGATCCAGCTGGAGCGCCGTGACATCGAGAGCACCCAGGCCCGCAGCCTGCAGGCCATCGCCACACTGTTGGCGCTGCTGGTCGGCGTGCTGGCGGCGGTGc < 1:284885/150‑1 (MQ=255) tCAAGCGCAGTGACGCGTTGTACCAGATCCAGCTGGAGCGCCGTGACATCGAGAGCACCCAGAGCCGCAGCCCGCAGGCCATCGCCACACTGTTGACGCTGCTGGTCGGCGTGCTGGCGGCGGTGCTGATCACCCGCCCACTCACGCGcc > 2:24221/1‑150 (MQ=255) gcgcAGTGACGCGTTGTACCAGATCCAGCTGGAGCGCCGTGACATCGAGAGCACCCAGGCCCGCAGCCTGCAGGCCATAGCCACACTGTTGGCGCTGCTGGTCGGCGTGCTGGCGGCGGTGCTGATCACCCGCCAGATCACGCGCCCGtt > 2:587682/1‑150 (MQ=255) aGTGACGCGTTGTACCAGATCCAGCTGGAGCGCCGTGACATCGAGAGCACCCAGGCCCGCGGCCTGCAGGCCATCGCCACACTGTTGGCGCTGCTGGTCGGCGTGCTGGCGGCGGTGCTGATCACCCGCCAGATCACGCGCCCGTTGCaa < 1:464647/150‑1 (MQ=255) gATCCAGCTGGAGCGCCGTGACATCGAGAGCACCCAGGCCCGCAGCCTGCAGGCCATCGCCACACTGTTGGCGCTGCTGGTCGGCGTGCTGGCGGCGGTGCTGATCACCCGCCAGATCACGCGCCCGTTGCAAGACACCCTGGTGGCCGt < 2:127252/150‑1 (MQ=255) tGGAGCGCCGTGACATCGAGAGCACCCAGGCCCGCAGCCTGCAGGCCATCGCCACACTGTTGGCGCTGCTGGTCGGCGTGCTGGCGGCGGTGCTGATCACCCGCCAGATCACGCGCCCGTTGCAAGACCCCCTGGTGGCCGTGCAGcaaa > 2:189730/1‑150 (MQ=255) gTGACATCGAGAGCACCCAGGCCCGCAGCCTGCAGGCCATCGCCACACTGTTGGCGCTGCTGGTCGGCGTGCTGGCGGCGGTGCTGATCACCCGCCAGATCACGCGCCCGTTGCAAGACACCCTGGTGGCCGTGGAGAAAATCGc < 2:448992/145‑1 (MQ=255) gTGACATCGAGAGCACCCAGGCCCGCAGCCTGCAGGCCATCGCCACACTGTTGGCGCTGCTGGTCGGCGTGCTGGCGGCGGTGCTGATCACCCGCCAGATCACGCGCCCGTTGCAAGACACCCTGGTGGCCGTGGAGAAAATCGc > 1:448992/1‑145 (MQ=255) aCATCGAGAGCACCCAGGCCCGCAGCCTGCAGGCCATCGCCACACTGTTGGCGCTGCTGGTCGGCGTGCTGGCGGCGGTATTGATCACACGCCAGATCACGCGCCCGTTGCAAGACACCCTGGTGGCCGTGGAGAAAATCGCCAGTgg > 1:660627/1‑148 (MQ=255) aCATCGAGAGCACCCAGGCCCGCAGCCTGCAGGCCATCGCCACACTGTTGGCGCTGCTGGTCGGCGTGCTGGCGGCGGTATTGATCACACGCCAGATCACGCGCCCGTTGCAAGACACCCTGGTGGCCGTGGAGAAAATCGCCAGTgg < 2:660627/148‑1 (MQ=255) tCGAGAGCACCCAGGCCCGCAGCCTGCAGGCCATCGCCACACTGTTGGCGCTGCTGGTCGGCGTGCTGGCGGCGGTGCTGATCACCCGCCAGATCACGCGCCCGTTGCAAGACACCCTGGTGGCCGTGGAGAAAATCGCCAGTGGCGAcc > 2:267196/1‑150 (MQ=255) tCGAGAGCACCCAGGCCCGCAGCCTGCAGGCCATCGCCACACTGTTGGCGCTGCTGGTCGGCGTGCTGGCGGCGGTGCTGATCACCCGCCAGATCACGCGCCCGTTGCAAGACACCCTGGTGGCCGTGGAGAAAATCGCCAGTGGCGAcc > 2:598370/1‑150 (MQ=255) aCCCAGGCCCGCAGCCTGCAGGCCATCGCCACACTGTTGGCGCTGCTGGTCGGCGTGCTGGCGGCGGTGCTGATCACCCGCCAGATCACGCGCCCGTTGCAAGACACCCTGGTGGCCGTGGAGAAAATCGCCAGTGGCGACCTTACCCaa < 1:703315/150‑1 (MQ=255) tttgtcccGCAGCCTGCAGGCCATCGCCACACTGTTGGCGCTGCTGGTCGGCGTGCTGGCGGCGGTGCTGATCACCCGCCAGATCACGCGCCCGTTGCAAGACACCCTGGTGGCCGTGGAGAAAATCGCCAGTGGCGACCTTACCCAaca > 1:215735/6‑150 (MQ=255) ccAGGCCCGCAGCCTGCAGGCCATCGCCACACTGTTGGCGCTGCTGGTCGGCGTGCTGGCGGCGGTGCTGATCACCCGCCAGATCACGCGCCCGtt > 2:303110/1‑96 (MQ=255) ccAGGCCCGCAGCCTGCAGGCCATCGCCACACTGTTGGCGCTGCTGGTCGGCGTGCTGGCGGCGGTGCTGATCACCCGCCAGATCACGCGCCCGtt < 1:303110/96‑1 (MQ=255) cctgCAGGCTGCGGGCCATCGCCACACTGTTGGCGCTGCTGGTCGGCGTGCTGGCGGCGGTGCTGATCACCCGCCAGATCACGCGCCCGTTGCAAGACACCCTGGTGGCCGTGGAGAAAATCGCCAGTGGCGACCTTACCCAACACATgc > 2:604271/4‑150 (MQ=255) cccGCAGCCTGCAGGCCATCGCCACACTGTTGGCGCTGCTGGTCGGCGTGCTGGCGGCGGTGCTGATCACCCGCCAGATCACGCGCCCGTTGCAAGACACCCTGGTGGCCGTGGAGAAAATCGCCAGTGGCGACCTTACCCAACACATgc < 1:598370/150‑1 (MQ=255) cGCAGCCTGCAGGCCATCGCCACACTGTTGGCGCTGCTGGTCGGCGTGCTGGCGGCGGTGCTGATCACCCGCCAGATCACGCGCCCGTTGCAAGACACCCTGGTGGCCGTGGAGAAAATCGCCAGTGGCGACCTTACCCAACACATgcgc < 1:382339/150‑1 (MQ=255) | GTACGCCAGTTCCGCGACGCGGTTGCCAACATCACCACCTCGCGCGCCGAAATGACCGTGCAGGGCGCCGACATCGTCAAGCGCAGTGACGCGTTGTACCAGATCCAGCTGGAGCGCCGTGACATCGAGAGCACCCAGGCCCGCAGCCTGCAGGCCATCGCCACACTGTTGGCGCTGCTGGTCGGCGTGCTGGCGGCGGTGCTGATCACCCGCCAGATCACGCGCCCGTTGCAAGACACCCTGGTGGCCGTGGAGAAAATCGCCAGTGGCGACCTTACCCAACACATGCGC > NC_002947/5284361‑5284651 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |