Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,507,701 | C→A | 12.1% | S305* (TCG→TAG) | cycA → | D‑alanine/beta‑alanine/D‑serine/glycine permease |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,507,701 | 0 | C | A | 12.1% | 90.4 / 3.3 | 33 | S305* (TCG→TAG) | cycA | D‑alanine/beta‑alanine/D‑serine/glycine permease |
Reads supporting (aligned to +/- strand): ref base C (17/12); new base A (2/2); total (19/14) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.28e-01 |
TGATCGCGATCATGGCCGTGACCCCGTGGCGCGATGTGGTGCCCGGAAAAAGCCCGTTCGTTGAGTTGTTCGTGCTGGCAGGCTTGCCGGCGGCGGCAAGCATCATCAACTTCGTGGTGCTGACCTCGGCGGCTTCGTCGGCCAACAGCGGCGTGTTCTCCACCAGCCGCATGCTCTACGGCCTGTCGCAGGAAGGTGACGCGCCCAAGGCTTTCGAGAAGCTGTCGAGCCGTTCGGTGCCGGCCAACGGCCTGTATTTCTCGTGCACCTGCCTGTTGCTCGGTGCGG > NC_002947/5507563‑5507850 | tGATCGCGATCATGGCCGTGACCCCGTGGCGCGATGTGGTGCCCGGAAAAAGCCCGTTCGTTGAGTTGTTCGTGCTGGCAGGCTTGCCGGCGGCGGCAAGCATCATCAACTTCGTGGTGCTGACCTCGGCGGCTTCGTCGGCCAACAgcg > 2:424618/1‑150 (MQ=255) tGATCGCGATCATGGCCGTGACCCCGTGGCGCGATGTGGTGCCCGGAAAAAGCCCGTTCGTTGAGTTGTTCGTGCTGGCAGGCTTGCCGGCGGCGGCAAGCATCATCAACTTCGTGGTGCTGACCTCGGCGGCTTCGTCGGCCAACAgcg < 2:694949/150‑1 (MQ=255) gATCATGGCCGTGACCCCGTGGCGCGATGTGGTGCCCGGAAAAAGCCCGTTCGTTGAGTTGTTCGTGCTGGCAGGCTTGCCGGCGGCGGCAAGCATCATCAACTTCGTGGTGCTGACCTCGGCGGCTTCGTCGGCCAACAGCGGCGTGtt > 1:102088/1‑150 (MQ=255) aTGGCCGTGACCCCGTGGCGCGATGTGGTGCCCGGAAAAAGCCCGTTCGTTGAGTTGTTCGTGCTGGCAGGCTTGCCGGCGGCGGCAAGCATCATCAACTTCGTGGTGCTGACCTCGGCGGCTTCGTCGGCCAACAGCGGCGTGTTCTcc < 2:607724/150‑1 (MQ=255) ccGTGGCGCGATGTGGTGCCCGGAAAAAGCCCGTTCGTTGAGTTGTTCGTGCTGGCAGGCTTGCCGGCGGCGGCAAGCATCATCAACTTCGTGGTGCTGACCTCGGCGGCTTCGTCGGCCAACAGCGGCGTGTTCTCCACCAGCCGCATg > 1:182935/1‑150 (MQ=255) cgcgATGTGGTGCCCGGAAAAAGCCCGTTCGTTGAGTTGTTCGTGCTGGCAGGCTTGCCGGCGGCGGCAAGCATCATCAACTTCGTGGTGCTGACCTCGGCGGCTTCGTCGGCCAACAGCGGCGTGTTCTCCACCAGCCGCATGCTCTAc < 1:210784/150‑1 (MQ=255) gcgATGTGGTGCCCGGAAAAAGCCCGTTCGTTGAGTTGTTCGTGCTGGCAGGCTTGCCGGCGGCGGCAAGCATCATCAACTTCGTGGTGCTGACCTCGGCGGCTTCGTCGGCCAACAGCGGCGTGTTCTCCACCAGCCGCATGCTCTACg > 2:635156/1‑150 (MQ=255) gtgCCCGGAAAAAGCCCGTTCGTTGAGTTGTTCGTGCTGGCAGGCTTGCCGGCGGCGGCAAGCATCATCAACTTCGTGGTGCTGACCTCGGCGGCTTCGTCGGCCAACAGCGGCGTGTTCTCCACCAGCCGCATGCTCTACGGCCTGTCg > 2:532579/1‑150 (MQ=255) ttGAGTTGTTCGTGCTGGCAGGCTTGCCGGCGGCGGCAAGCATCATCAACTTCGTGGTGCTGACCTCGGCGGCTTCGTCGGCCAACAgcggc < 2:599549/92‑1 (MQ=255) ttGAGTTGTTCGTGCTGGCAGGCTTGCCGGCGGCGGCAAGCATCATCAACTTCGTGGTGCTGACCTCGGCGGCTTCGTCGGCCAACAgcggc > 1:599549/1‑92 (MQ=255) ttGAGTTGTTCGTGCTGGCAGGCTTGCCGGCGGCGGCAAGCATCATCAACTTCGTGGTGCTGACCTCGGCGGCTTCGTCGGCCAACAGCGGCGTGTTCTCCACCAGCCGCATGCTCTACGGCCTGTCGCAGGAAGGTGACGCGCCCAAgg > 1:192250/1‑150 (MQ=255) ttGAGTTGTTCGTGCTGGCAGGCTTGCCGGCGGCGGCAAGCATCATCAACTTCGTGGTGCTGACCTCGGCGGCTTCGTCGGCCAACAGCGGCGTGTTCTCCACCAGCCGCATGCTCTACGGCCTGTCGCAGGAAGGTGACGCGCCCAAgg > 1:530097/1‑150 (MQ=255) gttgttCGTGCTGGCAGGCTTGCCGGCGGCGGCAAGCATCATCAACTTCGTGGTGCTGACCTCGGCGGTTTCGTCGGCCAACAGCGGCGTGTTCTTCACCAGCAGCATTCTCTACGGCCTGTCGCAGGAAGGTGACGCGCCCAAGGCttt > 2:35202/1‑150 (MQ=255) ttgttCGTGCTGGCAGGCTTGCCGGCGGCGGCAAGCATCATCAACTTCGTGGTGCTGACCTCGGCGGCTTCGTCGGCCAACAGCGGCGTGTTCTCCACCAGCCGCATGCTCTACGGCCTGTCGCAGGAAGGTGACGCGCCCAAGGCTTTc > 2:140685/1‑150 (MQ=255) ttgttCGTGCTGGCAGGCTTGCCGGCGGCGGCAAGCATCATCAACTTCGTGGTGCTGACCTCGGCGGCTTCGTCGGCCAACAGCGGCGTGTTCTCCACCAGCCGCATGCTCTACGGCCTGTCGCAGGAAGGTGACGCGCCCAAGGCTTTc > 2:320297/1‑150 (MQ=255) gttCGTGCTGGCAGGCTTGCCGGCGGCGGCAAGCATCATCAACTTCGTGGTGCTGACCTCGGCGGCTTCGTCGGCCAACAGCGGCGTGTTCTCCACCAGCCGCATGCTCTACGGCCTGTCGCAGGAAGGTGACGCGCCCAAGGCTTTCga < 1:138873/150‑1 (MQ=255) ttCGTGCTGGCAGGCTTGCCGGCGGCGGCAAGCATCATCAACTTCGTGGTGCTGACCTCGGCGGCTTCGTCGGCCAACAgcggc < 2:681348/84‑1 (MQ=255) ttCGTGCTGGCAGGCTTGCCGGCGGCGGCAAGCATCATCAACTTCGTGGTGCTGACCTCGGCGGCTTCGTCGGCCAACAgcggc > 1:681348/1‑84 (MQ=255) gTGCTGGCAGGCTTGCCGGCGGCGGCAAGCATCATCAACTTCGTGGTGCTGACCTCGGCGGCTTCGTCGGCCAACAGCGGCGTGTTCTCCACCAGCCGCATGCTCTACGGCCTGTCGCAGGAAGGTGACGCGCCCAAGGCTTTCGACAAg < 1:424618/150‑1 (MQ=255) gCAGGCTTGCCGGCGGCGGCAAGCATCATCAACTTCGTGGTGCTGACCTCGGCGGCTTCGTCGGCCAACAGCGGCGTGTTCTCCACCAGCCGCATGCTCTACGGCCTGTCGCAGGAAGGTGACGCGCCCAAGGCTTTCGAGAAGCTGTCg > 1:237818/1‑150 (MQ=255) atgCTTGCCGCCGCCGGCAAGCATCATCAACTTCGTGGTGCTGACCTCGGCGGCTTCGTCGGCCAACAGCGGCGTGTTCTCCACCAGCCGCATGCTCTACGGCCTGTCGCAGGAAGGTGACGCGCCCAAGGCTTTCGAGAAGCTGTCGAg > 2:297187/3‑150 (MQ=255) gcggcggcAAGCATCATCAACTTCGTGGTGCTGACCTCGGCGGCTTCGTCGGCCAACAGCGGCGTGTTCTCCACCAGCCGCATGCTCTACGGCCTGTCGCAGGAAGGTGACGCGCCCAAGGCTTTCGAGAAGCTGTCGAGCCGTTCGGTg < 1:320297/150‑1 (MQ=255) ggcAAGCATCATCAACTTCGTGGTGCTGACCTCGGCGGCTTCGTCGGCCAACAGCGGCGTGTTCTCCACCAGCCGCATGCTCTACGGCCTGTCGCAGGAAGGTGACGCGCCCAAGGCTTTCGAGAAGCTGTCGAGCCGTTCGGTGCCGGc > 2:77868/1‑150 (MQ=255) aaGCATCATCAACTTCGTGGTGCTGACCTCGGCGGCTTCGTCGGCCAACAGCGGCGTGTTCTCCACCAGCCGCATGCTCTACGGCCTGTCGCAGGAAGGTGACGCGCCCAAGGCTTTCGAGAAGCTGTCGAGcc > 2:414215/1‑134 (MQ=255) aaGCATCATCAACTTCGTGGTGCTGACCTCGGCGGCTTCGTCGGCCAACAGCGGCGTGTTCTCCACCAGCCGCATGCTCTACGGCCTGTCGCAGGAAGGTGACGCGCCCAAGGCTTTCGAGAAGCTGTCGAGcc < 1:414215/134‑1 (MQ=255) aaCTTCGTGGTGCTGACCTCGGCGGCTTCGTCGGCCAACAGCGGCGTGTTCTCCACCAGCCGCATGCTCTACGGCCTGTCGCAGGAAGGTGACGCGCCCAAGGCTTTCGAGAAGCTGTCGAGCCGTTCGGTGCCGGCCAACGGCCTGTAt > 1:702107/1‑150 (MQ=255) cTCGGCGGCTTCGTCGGCCAACAGCGGCGTGTTCTCCACCAGCCGCATGCTCTACGGCCTGTCGCAGGAAGGTGACGCGCCCAAGGCTTTCGAGAAGCTGTCGAGCCGTTCGGTGCCGGCCAACGGCCTGTATTTCTCGTGCAcctgcct < 2:192250/150‑1 (MQ=255) cTCGGCGGCTTCGTAGGCCAACAGCGGCGTGTTCTCCACCAGCCGCATGCTCTACGGCCTGTCGCAGGAAGGTGACGCGCCCAAGGCTTTCGAGAAGCTGTCGGGCCGTTCGGTGCCGGCCAACGGCCTGTATTtctc < 1:663841/138‑1 (MQ=255) cTCGGCGGCTTCGTAGGCCAACAGCGGCGTGTTCTCCACCAGCCGCATGCTCTACGGCCTGTCGCAGGAAGGTGACGCGCCCAAGGCTTTCGAGAAGCTGTCGGGCCGTTCGGTGCCGGCCAACGGCCTGTATTtctc > 2:663841/1‑138 (MQ=255) cTCGGCGGCTTCGTAGGCCAACAGCGGCGTGTTCTCCACCAGCCGCATGCTCTACGGCCTGTCGCAGGAAGGTGACGCGCCCAAGGCTTTCGAGAAGCTGTCGAGCCGTTCGGTGCCGGCCAACGGCCTGTATTtctc > 2:663577/1‑138 (MQ=255) cTCGGCGGCTTCGTAGGCCAACAGCGGCGTGTTCTCCACCAGCCGCATGCTCTACGGCCTGTCGCAGGAAGGTGACGCGCCCAAGGCTTTCGAGAAGCTGTCGAGCCGTTCGGTGCCGGCCAACGGCCTGTATTtctc < 1:663577/138‑1 (MQ=255) ggcTTCGTCGGCCAACAGCGGCGTGTTCTCCACCAGCCGCATGCTCTACGGCCTGTCGCAGGAAGGTGACGCGCCCAAGGCTTTCGAGAAGCTGTCGAGCCGTTCGGTGCCGGCCAACGGCCTGTATTTCTCGTGCACCTGCCTGTTGCt < 1:532579/150‑1 (MQ=255) gcTTCGTCGGGCAACAGCGGCGTGTTCTCCACCAGCCGCATGCTCTACGGCCTGTCGCAGGAAGGTGACGCGCCCAAGGCTTTCGAGACACTGGGTAGCCGTTCGGTGCCGGCCAACGGCCTGTATTTCTCGTGCACCTGCCTGTTGCTc < 2:102088/150‑1 (MQ=255) cgGCCAACAGCGGCGTGTTCTCCACCAGCCGCATGCTCTACGGCCTGTCGCAGGAAGGTGACGCGCCCAAGGCTTTCGAGAAGCTGTCGAGCCGTTCGGTGCCGGCCAACGGCCTGTATTTCTCGTGCACCTGCCTGTTGCTcggtgcgg < 1:685834/150‑1 (MQ=255) | TGATCGCGATCATGGCCGTGACCCCGTGGCGCGATGTGGTGCCCGGAAAAAGCCCGTTCGTTGAGTTGTTCGTGCTGGCAGGCTTGCCGGCGGCGGCAAGCATCATCAACTTCGTGGTGCTGACCTCGGCGGCTTCGTCGGCCAACAGCGGCGTGTTCTCCACCAGCCGCATGCTCTACGGCCTGTCGCAGGAAGGTGACGCGCCCAAGGCTTTCGAGAAGCTGTCGAGCCGTTCGGTGCCGGCCAACGGCCTGTATTTCTCGTGCACCTGCCTGTTGCTCGGTGCGG > NC_002947/5507563‑5507850 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |