Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,809,905 | G→T | 9.7% | P129T (CCT→ACT) | PP_5086 ← | nuclease |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,809,905 | 0 | G | T | 9.7% | 117.6 / 2.8 | 41 | P129T (CCT→ACT) | PP_5086 | nuclease |
Reads supporting (aligned to +/- strand): ref base G (19/18); new base T (2/2); total (21/20) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.86e-01 |
GATACCTTCGATACGACCACGCACAACAGCGAAACCTGACTGCCTGACATCGCTTGCAGCCACTACGGGCGAATGCCGCCACAGGCCAACGCCGGCCTGGCGCGCAGCTTGTTCGGCAAGCTGCTGACAACCGCTGAGACGTACATTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCTTCCAGATTGTCGCCATTGCGGCTGTAGATGTGCGCCAGTGTGCGACCGTACTTGTCTTTACCTTCAACACCAGGCACCAGCCCGACGCGATCGTCATTGGCCT > NC_002947/5809756‑5810054 | gATACCTTCGATACGACCACGCACAACAGCGAAACCTGACTGCCTGACATCGCTTGCAGCCACTACGGGCGAATGCCGCCACAGGCCAACGCCGGCCTGGCGCGCAGCTTGTTCGGCAAGCTGCTGACAACCGCTGAGACGTACATTAgg < 2:98200/150‑1 (MQ=255) gATACCTTCGATACGACCACGCACAACAGCGAAACCTGACTGCCTGACATCGCTTGCAGCCACTACGGGCGAATGCCGCCACAGGCCAACGCCGGCCTGGCGCGCAGCTTGTTCGGCAAGCTGCTGACAACCGCTGAGACGTACATTAgg < 2:156158/150‑1 (MQ=255) aCCTTCGATACGACCACGCACAACAGCGAAACCTGACTGCCTGACATCGCTTGCAGCCACTACGGGCGAATGCCGCCACAGGCCAACGCCGGCCTGGCGCGCAGCTTGTTCGGCAAGCTGCTGACAACCGCTGAGACGTACATTAGGGGc > 2:580497/1‑150 (MQ=255) tCGATACGACCACGCACAACAGCGAAACCTGACTGCCTGACATCGCTTGCAGCCACTACGGGCGAATGCCGCCACAGGCCAACGCCGGCCTGGCGCGCAGCTTGTTCGGCAAGCTGCTGACAACCGCTGAGACGTACATTAGGGGCAATa < 2:674876/150‑1 (MQ=255) ccACGCACAACAGCGAAACCTGACTGCCTGACATCGCTTGCAGCCACTACGGGCGAATGCCGCCACAGGCCAACGCCGGCCTGGCGCGCAGCTTGTTCGGCAAGCTGCTGACAACCGCTGAGACGTACATTAGGGCCAATAGCCATGCgg < 2:593121/150‑1 (MQ=255) gcGCACAACAGCGAAAGCTGACTGCCTGACATCGCTTGCAGCCACTACGGGCGAATGCCGCCACAGGCCAACGCCGGCCTGGCGCGCAGCTTGTTCGGCAAGCTGCTGACAACCGCTGAGACGTACAGTAGGGGCAATAGCCACGCGGTa < 2:41392/149‑1 (MQ=255) aCGCACAACAGCGAAACCTGACTGCCTGACATCGCTTGCAGCCACTACGGGCGAATGCCGCCACAGGCCAACGCCGGCCTGGCGCGCAGCTTGTTCGGCAAGCTGCTGACAACCGCTGAGACGTACATTAGGGGCAATAGCCACGCGGTa > 2:520457/1‑150 (MQ=255) aacaGCGAAACCTGACTGCCTGACATCGCTTGCAGCCACTACGGGCGAATGCCGCCACAGGCCAACGCCGGCCTGGCGCGCAGCTTGTTCGGCAAGCTGCTGACAACCGCTGAGACGTACATTAGGGGCAATAGCCACGCGGTAGCCCaa > 2:379004/1‑150 (MQ=255) cTGACTGCCTGACATCGCTTGCAGCCACTACGGGCGAATGCCGCCACAGGCCAACGCCGGCCTGGCGCGCAGCTTGTTCGGCAAGCTGCTGACAACCGCTGAGACGTACATTAgg > 2:637696/1‑115 (MQ=255) cTGACTGCCTGACATCGCTTGCAGCCACTACGGGCGAATGCCGCCACAGGCCAACGCCGGCCTGGCGCGCAGCTTGTTCGGCAAGCTGCTGACAACCGCTGAGACGTACATTAgg < 1:637696/115‑1 (MQ=255) cTGACTGCCTGACATCGCTTGCAGCCACTACGGGCGAATGCCGCCACAGGCCAACGCCGGCCTGGCGCGCAGCTTGTTCGGCAAGCTGCTGACAACCGCTGAGACGTACATTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTaa > 2:562128/1‑150 (MQ=255) ccTGACATCGCTTGCAGCCACTACGGGCGAATGCCGCCACAGGCCAACGCCGGCCTGGCGCGCAGCTTGTTCGGCAAGCTACTGACAACCGCTGAGACGTACATTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTg > 1:462971/1‑150 (MQ=255) tGACATCGCTTGCAGCCACTACGGGCGAATGCCGCCACAGGCCAACGCCGGCCTGGCGCGCAGCTTGTTCGGCAAGCTGCTGACAACCGCTGAGACGTACATTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTgcg > 1:170116/1‑150 (MQ=255) gACATCGCTTGCAGCCACTACGGGCGAATGCCGCCACAGGCCAACGCCGGCCTGGCGCGCAGCTTGTTCGGCAAGCTGCTGACAACCGCTGAGACGTACATTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTgcgc < 2:134347/150‑1 (MQ=255) aCATCGCTTGCAGCCACTACGGGCGAATGCCGCCACAGGCCAACGCCGGCCTGGCGCGCAGCTTGTTCGGCAAGCTGCTGACAACCGCTGAGACGTACATTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCt > 1:121664/1‑150 (MQ=255) aCATCGCTTGCAGCCACTACGGGCGAATGCCGCCACAGGCCAACGCCGGCCTGGCGCGCAGCTTGTTCGGCAAGCTGCTGACAACCGCTGAGACGTACATTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCt < 1:259919/150‑1 (MQ=255) cATCGCTTGCAGCCACTACGGGCGAATGCCGCCACAGGCCAACGCCGGCCTGGCGCGCAGCTTGTTCGGCAAGCTGCTGACAACCGCTGAGACGTACATTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCtt > 1:335318/1‑150 (MQ=255) aGCCACTACGGGCGAATGCCGCCACAGGCCAACGCCGGCCTGGCGCGCAGCTTGTTCGGCAAGCTGCTGACAACCGCTGAGACGTACATTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCTTCCAGATTGTc < 2:468481/150‑1 (MQ=255) ccACTACGGGCGAATGCCGCCACAGGCCAACGCCGGCCTGGCGCGCAGCTTGTTCGGCAAGCTGCTGACAACCGCTGAGACGTACATTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCTTCCAGATTGTCGc < 2:170116/150‑1 (MQ=255) tACGGGCGAATGCCGCCACAGGCCAACGCCGGCCTGGCGCGCAGCTTGTTCGGCAAGCTGCTGACAACCGCTGAGACGTACATTAGTGGCaa < 2:520073/92‑1 (MQ=255) tACGGGCGAATGCCGCCACAGGCCAACGCCGGCCTGGCGCGCAGCTTGTTCGGCAAGCTGCTGACAACCGCTGAGACGTACATTAGTGGCaa > 1:520073/1‑92 (MQ=255) acaGGCCAACGCCGGCCTGGCGCGCAGCTTGTTCGGCAAGCTGCTGACAACCGCTGAGACGTACATTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCTTCCAGATTGTCGCCATTGCGGCTGTAGATGTgcg > 1:207196/1‑150 (MQ=255) cAACGCCGGCCTGGCGCGCAGCTTGTTCGGCAAGCTGCTGACAACCGCTGAGACGTACATTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCTTCCAGATTGTCGCCATTGCGGCTGTAGATGTGCGCCAgtg > 2:655660/1‑150 (MQ=255) cTGGCGCGCAGCTTGTTCGGCAAGCTGCTGACAACCGCTGAGACGTACATTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCTTCCAGATTGTCGCCATTGCGGCTGTAGATGTGCGCCAGTGTGCGACCGTa < 2:55097/150‑1 (MQ=255) tGGCGCGCAGCTTGTTCGGCAAGCTGCTGACAACCGCTGAGACGTACATTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCTTCCAGATTGTCGCCAtt < 1:407620/116‑1 (MQ=255) tGGCGCGCAGCTTGTTCGGCAAGCTGCTGACAACCGCTGAGACGTACATTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCTTCCAGATTGTCGCCAtt > 2:407620/1‑116 (MQ=255) cAGCTTGTTCGGCAAGCTGCTGACAACCGCTGAGACGTACATTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCTTCCAGATTGTCGCCATTGCGGCTGTAGATGTGCGCCAGTGTGCGACCGTACTTGTCtt > 1:598436/1‑150 (MQ=255) aGCTTGTTCGGCAAGCTGCTGACAACCGCTGAGACGTACATTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCTTCCAGATTGTCGCCATTGCGGCTGTAGATGTGCGCCAGTGTGCGACCGTACTTGTCttt < 2:121664/150‑1 (MQ=255) gTTCGGCAAGCTGCTGACAACCGCTGAGACGTACATTAGTGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCTTCCAGATTGTCGCCATTGCGGCTGTAGATGTGCGCCAGTGTGCGACCGTACTTGt > 2:330158/1‑141 (MQ=255) gTTCGGCAAGCTGCTGACAACCGCTGAGACGTACATTAGTGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCTTCCAGATTGTCGCCATTGCGGCTGTAGATGTGCGCCAGTGTGCGACCGTACTTGt < 1:330158/141‑1 (MQ=255) gTTCGGCAAGCTGCTGACAACCGCTGAGACGTACATTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCTTCCAGCTTGTCGCCATTGCGGCTGTAGATGTGCGCCAGTGTGCGACCGTACTTGTCTTTACCtt < 1:580497/150‑1 (MQ=255) gTTCGGCAAGCTGCTGACAACCGCTGAGACGTACATTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCTTCCAGATTGTCGCCATTGCGGCTGCAGATGTGCGCCAGTGTGCGACCGTACTTGTCTTTACCtt < 1:562128/150‑1 (MQ=255) ggCAAGCTGCTGACAACCGCTGAGACGTACATTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCTTCCAGATTGTCGCCATTGCGGCTGTa < 2:663420/108‑1 (MQ=255) ggCAAGCTGCTGACAACCGCTGAGACGTACATTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCTTCCAGATTGTCGCCATTGCGGCTGTa > 1:663420/1‑108 (MQ=255) ggCAAGCTGCTGACAACCGCTGAGACGTACATTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCTTCCAGATTGTCGCCATTGCGGCTGTAGATGTGCGCCAGTGTGCGACCGTACTTGTCTTTACCTTCAac < 2:335318/150‑1 (MQ=255) aGCTGCTGACAACCGCTGAGACGTACATTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCTTCCAGATTGTCGCCATTGCGGCTGTAGATGTGCGCCAGTGTGCGACCGTACTTGTCTTTACCTTCAACACCa < 2:323043/150‑1 (MQ=255) tgctgACAACCGCTGAGACGTACATTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCTTCCAGATTGTCGCCATTGCGGCTGTAGAt > 2:677027/1‑104 (MQ=255) tgctgACAACCGCTGAGACGTACATTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCTTCCAGATTGTCGCCATTGCGGCTGTAGAt < 1:677027/104‑1 (MQ=255) ctgACAACCGCTGAGACGTACATTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCTTCCAGATTGTCGCCATTGCGGCTGTAGATGTGCGCCAGTGTGCGACCGTACTTGTCTTTACCTTCAACACCAGGCAc > 1:481004/1‑150 (MQ=255) tGAGACGTACATTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCTTCCAGATTGTCGCCATTGCGGCTGTAGATGTGCGCCAGTGTGCGACCGTACTTGTCTTTACCTTCAACACCAGGCACCAGCCCGAcgc > 1:417887/1‑150 (MQ=255) gTACATTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCTTCCAGATTGTCGCCAtt < 2:619123/73‑1 (MQ=255) gTACATTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCTTCCAGATTGTCGCCAtt > 1:619123/1‑73 (MQ=255) gTACATTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCTTCCAGATTGTCGCCATTGCGGCTGTAGATGTGCGCCAGTGTGCGACCGTACTTGTCTTTACCTTCAACACCAGGCACCAGCCCGACGCGATCGt > 1:594614/1‑150 (MQ=255) aTTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCTTCCAGATTGTCGCCATTGCGGCTGTAGATGTGCGCCAGTGTGCGACCGTACTTGTCTTTACCTTCAACACCa > 2:512466/1‑124 (MQ=255) aTTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCTTCCAGATTGTCGCCATTGCGGCTGTAGATGTGCGCCAGTGTGCCACCGTACTTGTCTTTACCTTCAACACCa < 1:512466/124‑1 (MQ=255) gggCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCTTCCCGATTGTCGCCATTGCGGCTGTAGCTGCGCGGCAGTGTCCCACCTTCCTTGTCTTTACCTTCACAGCCCGGCACCAGCACGCCGCGATCGTCATTGGCCt > 1:317459/1‑150 (MQ=255) gggCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCTTCCAGATTGTCGCCATTGCGGCTGTAGATGTGCGCCAGTGTGCGACCGTACTTGTCTTTACCTTCAACACCAGGCACCAGcc > 2:155364/1‑129 (MQ=255) gggCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCTTCCAGATTGTCGCCATTGCGGCTGTAGATGTGCGCCAGTGTGCGACCGTACTTGTCTTTACCTTCAACACCAGGCACCAGcc < 1:155364/129‑1 (MQ=255) | GATACCTTCGATACGACCACGCACAACAGCGAAACCTGACTGCCTGACATCGCTTGCAGCCACTACGGGCGAATGCCGCCACAGGCCAACGCCGGCCTGGCGCGCAGCTTGTTCGGCAAGCTGCTGACAACCGCTGAGACGTACATTAGGGGCAATAGCCACGCGGTAGCCCAAGCCCTCGCTAAGCAATTGCGCTTCCAGATTGTCGCCATTGCGGCTGTAGATGTGCGCCAGTGTGCGACCGTACTTGTCTTTACCTTCAACACCAGGCACCAGCCCGACGCGATCGTCATTGGCCT > NC_002947/5809756‑5810054 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |