Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,943,213 | G→T | 8.3% | K181N (AAG→AAT) | PP_5210 → | alcohol dehydrogenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,943,213 | 0 | G | T | 8.3% | 152.0 / 2.5 | 48 | K181N (AAG→AAT) | PP_5210 | alcohol dehydrogenase |
Reads supporting (aligned to +/- strand): ref base G (21/23); new base T (2/2); total (23/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.36e-01 |
CGCCAGCGTGGCCAGTTGCAAGCCGGCGAGACCCTGCTGGTACTGGGCGCTTCCGGCGGGGTGGGCCTGGCGGCGGTGGAGATCGGCAAGGCCATGGGCGCGCGGGTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAGGCCAACCTGCGCGAAGAAATCAAACGCCTGACCGGTGGCCAGGGCGTGGACGTGATCTATGACCCGGTCGGTGGCGAGCTGTTCGAACAAGCGGTGCGCGGGTTGGCCTG > NC_002947/5943064‑5943359 | cgcCAGCGTGGCCAGTTGCAAGCCGGCGAGACCCTGCTGGTACTGGGCGCTTCCGGCGGGGTGGGCCTGGCGGCGGTGGAGATCGGCAAGGCCATGGGCGCGCGGGTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAg < 2:441210/150‑1 (MQ=255) gcCAGCGTGGCCAGTTGCAAGCCGGCGAGACCCTGCTGGTACTGGGCGCTTCCTGCGGGGTGTGCCTAGAGGCGGAGGAGGCCGGCAACGCCATGGCCGCGGGGCTGATCGCGGCGGCGAGGAGTGCCGATGAACTGGCCGGGGAAAAgg > 2:268415/1‑150 (MQ=255) ccAGTTGCAAGCCGGCGAGACCCTGCTGGTACTGGGCGCTTCCGGCGGGGTGGGCCTGGCGGCGGTGGAGATCGGCAAGGCCATGGGCGCGCGGGTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGc < 2:454237/150‑1 (MQ=255) ccAGTTGCAAGCCGGCGAGACCCTGCTGGTACTGGGCGCTTCCGGCGGGGTGGGCCTGGCGGCGGTGGAGATCGGCAAGGCCATGGGCGCGCGGGTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGc < 1:15146/150‑1 (MQ=255) ttGCAAGCCGGCGAGACCCTGCTGGTACTGGGCTCTTCCGCCGGGGTGGGCCTGGCGGCGGTGGAGATCGGCAAGGCCATGGGCGCGCGGGTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGAt < 1:270076/150‑1 (MQ=255) aaGCCGGCGAGACCCTGCTGGTACTGGGCGCTTCCGGCGGGGTGGGCCTGGCGGCGGTGGAGATCGGCAAGGCCATGGGCGCGCGGGTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGc > 2:123812/1‑150 (MQ=255) cGAGACCCTGCTGGTACTGGGCGCTTCCGGCGGGGTGGGCCTGGCGGCGGTGGAGATCGGCAAGGCCATGGGCGCGCGGGTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGa < 1:452809/150‑1 (MQ=255) gaCCCTGCTGGTACTGGGCGCTTCCGGCGGGGTGGGCCTGGCGGCGGTGGAGATCGGCAAGGCCATGGGCGCGCGGGTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGc > 1:214625/1‑140 (MQ=255) gaCCCTGCTGGTACTGGGCGCTTCCGGCGGGGTGGGCCTGGCGGCGGTGGAGATCGGCAAGGCCATGGGCGCGCGGGTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGc < 2:214625/140‑1 (MQ=255) gaCCCTGCTGGTACTGGGCGCTTCCGGCGGGGTGGGCCTGGCGGCGGTGGAGATCGGCAAGGCCATGGGCGCGCGGGTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGACTa < 1:123812/150‑1 (MQ=255) gaCCCTGCTGGTACTGGGCGCTTCCGGCGGGGTGGGCCTGGCGGCGGTGGAGATCGGCAAGGCCATGGGCGCGCGGGTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGACTa > 2:601221/1‑150 (MQ=255) ctgctgGTACTGGGCGCTTCCGGCGGGGTGGGCCTGGCGGCGGTGGAGATCGGCAAGGCCATGGGCGCGCGGGTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGACTACCGc > 2:109507/1‑150 (MQ=255) ctgGTACTGGGCGCTTCCGGCGGGGTGGGCCTGGCGGCGGTGGAGATCGGCAAGGCCATGGGCGCGCGGGTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAg < 2:703932/150‑1 (MQ=255) cTGGGCGCTTCCGGCGGGGTGGGCCTGGCGGCGGTGGAGATCGGCAAGGCCATGGGCGCGCGGGTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGAc < 2:230636/135‑1 (MQ=255) cTGGGCGCTTCCGGCGGGGTGGGCCTGGCGGCGGTGGAGATCGGCAAGGCCATGGGCGCGCGGGTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGAc > 1:230636/1‑135 (MQ=255) ggCGCTTCCGGCGGGGTGGGCCTGGCGGCGGTGGAGATCGGCAAGGCCCTGGGCGCGCGGGTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAAGCCAACCTg > 2:292041/1‑150 (MQ=255) aTCGGCAAGGCCATGGGCGCGCGGGTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAATGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAGGCCAACCTGCGCGAAGAAATCAAACGCCTGACCGGTGGCCAGGGc > 2:424892/1‑150 (MQ=255) gCAAGGCCATGGGCGCGCGGGTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAATGCTGCCgg > 2:715992/1‑73 (MQ=255) gCAAGGCCATGGGCGCGCGGGTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAATGCTGCCgg < 1:715992/73‑1 (MQ=255) aaGGCCATGGGCGCGCGGGTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGACTACa > 1:372669/1‑94 (MQ=255) aaGGCCATGGGCGCGCGGGTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGACTACa < 2:372669/94‑1 (MQ=255) aaGGCCATGGGCGCGCGGGTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAGGCCAACCTGCGCgaagaa < 1:179734/117‑1 (MQ=255) aaGGCCATGGGCGCGCGGGTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAGGCCAACCTGCGCgaagaa > 2:179734/1‑117 (MQ=255) gCCATGGGCGCGCGGGTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAGGCCAACCTGCGCGAAGAAATCAAACGCCTGACCGGTGGCCAGGGCGTGGACGTg > 1:401397/1‑150 (MQ=255) ggggCGCGCGGGTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAGGCCAACCTGCGCGAAGAAATCAAACGCCTGACCGGTGGCCAGGGCGTGGACGTGATCt < 2:586663/149‑1 (MQ=255) ggCGCGCGGGTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAGGCCAACCTGCGCGAAGAAATCAAACGCCTGACCGGTGGCCAGGGCGTGGACGTGATCTAt > 1:433277/1‑150 (MQ=255) ggCGCGCGGGTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAGGCCAACCTGCGCGAAGAAATCAAACGCCTGACCGGTGGCCAGGGCGTGGACGTGATCTAt < 1:109507/150‑1 (MQ=255) gcgcgcGGGTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAATGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAGGCCAACCTGCGCGAAGAAATCAAACGCCTGACCGGTGGCCAGGGCGTGGACGTGATCTATg < 1:424892/150‑1 (MQ=255) cgGGTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAGGCCAACCTGCGCGAAGAAATCAAACGCCTGACCGGTGGCCAGGGCGTGGACGTGATCTATGACCcg < 1:601221/150‑1 (MQ=255) ggTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAGGCCAACCTGCGCGAAGAAATCAAAc < 2:172356/107‑1 (MQ=255) ggTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAGGCCAACCTGCGCGAAGAAATCAAAc > 1:172356/1‑107 (MQ=255) gTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAGGCCAACCTGCGCGAAGAAATCAAACGCCTGACCGGTGGCCAGGGCGTGGACGTGATCTATGACCcggtc < 1:556878/150‑1 (MQ=255) tGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAGGCCAACCTGCGCGAAGAAATCAAACGCCTGACCGGTGGCCAGGGCGTGGACGTGATCTATGACCcggtcg > 2:728235/1‑150 (MQ=255) tCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAGGCCAACCTGCGCGAAGAAATCAAACGCCTGACCGGTGGCCAGGGCGTGGACGTGATCTATGACCCGGTCGGTg < 2:419890/150‑1 (MQ=255) cggcggCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAGGCCAACCTGCGCGAAGAAATCAAAc < 1:496358/99‑1 (MQ=255) cggcggCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAGGCCAACCTGCGCGAAGAAATCAAAc > 2:496358/1‑99 (MQ=255) gcCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAGGCCAACCTGCGCGAAGAAATCAAACGCCTGACCGGTGGCCAGGGCGTGGACGTGATCTATGACCCGGTCGGTGGCGAGCTg > 1:566925/1‑150 (MQ=255) cagcagTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAGGCCAACCTGCGCGAAGAAATCAAACGCCTGACCGGTGGCCAGGGCGt < 1:657420/114‑1 (MQ=255) cagcagTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAGGCCAACCTGCGCGAAGAAATCAAACGCCTGACCGGTGGCCAGGGCGt > 2:657420/1‑114 (MQ=255) agcagTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAGGCCTGCCTGCGCGAAGAAATCAAACGCCTGACCGGTGGCCAGGGCGTGGACGTGATCTATGACCCGGTCGGTGGCGAGCTGTTc < 1:728235/150‑1 (MQ=255) ccGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAGGCCAACCTGCGCGAAGAAATCAAACGCCTGACCGGTGGCCAGGGCGTGGACGTGATCTATGACCCGGTCGGTGGCGAGCTGTTCGAACAAg > 2:441689/1‑150 (MQ=255) cGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAGGCCAACCTGCGCGAAGAAATCAAACGCCTGACCGGTGGCCAGGGCGTGGACGTGATCTATGACCCGGTCGGTGGCGAGCTGTTCGAACAAGc > 2:254903/1‑150 (MQ=255) gTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAGGCCAACCTGCGCGAAGAAATCAAACGCCTGACCTGTGGCCAGGGCGTGGACGTGATCTATGACCCGGTCGGTGGCGAGCTGTTCGAACAAGCGGTGCGCGGGTTg < 2:177621/150‑1 (MQ=255) ccAAGGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAGGCCAACCTGCGCGAAGAAATCAAACGCCTGACCGGTGGCCAGGGCGTGGACGTGATCTATGACCcggtc < 1:137230/110‑1 (MQ=255) ccAAGGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAGGCCAACCTGCGCGAAGAAATCAAACGCCTGACCGGTGGCCAGGGCGTGGACGTGATCTATGACCcggtc > 2:137230/1‑110 (MQ=255) ccAAGGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAGGCCAACCTGCGCGAAGAAATCAAACGCCTGACCGGTGGCCAGGGCGTGGACGTGATCTATGACCCGGTCGGTGGCGAGCt < 1:687957/121‑1 (MQ=255) ccAAGGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAGGCCAACCTGCGCGAAGAAATCAAACGCCTGACCGGTGGCCAGGGCGTGGACGTGATCTATGACCCGGTCGGTGGCGAGCt > 2:687957/1‑121 (MQ=255) cAAGGCTGCCGGGGCGGATGAGCTGTTCGACTACAGCCAGGCCAACCTGCGCGAAAAAATCAAACGCCTGACCGGTGGCCAGGGCGTGGACGTGATCTATGACCCGGTCGGTGGCGAGCTGTTCGAACAAGCGGTGCGCGGGTTGGCCTg > 1:321086/1‑150 (MQ=255) cAAGGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAGGCCAACCTGCGCGAAGAAATCAAACGCCTGACTGGTGGCCa < 2:256109/81‑1 (MQ=255) cAAGGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAGGCCAACCTGCGCGAAGAAATCAAACGCCTGACTGGTGGCCa > 1:256109/1‑81 (MQ=255) | CGCCAGCGTGGCCAGTTGCAAGCCGGCGAGACCCTGCTGGTACTGGGCGCTTCCGGCGGGGTGGGCCTGGCGGCGGTGGAGATCGGCAAGGCCATGGGCGCGCGGGTGATCGCGGCGGCCAGCAGTGCCGAGAAACTGGCCGTGGCCAAGGCTGCCGGGGCGGATGAGCTGATCGACTACAGCCAGGCCAACCTGCGCGAAGAAATCAAACGCCTGACCGGTGGCCAGGGCGTGGACGTGATCTATGACCCGGTCGGTGGCGAGCTGTTCGAACAAGCGGTGCGCGGGTTGGCCTG > NC_002947/5943064‑5943359 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |