Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 6,006,777 | G→A | 8.5% | G279G (GGC→GGT) | PP_5261 ← | LysR family transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 6,006,777 | 0 | G | A | 8.5% | 132.0 / 2.9 | 47 | G279G (GGC→GGT) | PP_5261 | LysR family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base G (22/21); new base A (2/2); total (24/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01 |
TACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCATGGATATCCCGTAGCCACGCGCCGCGGCAA > NC_002947/6006630‑6006925 | tACAGGGCATACGACCTGTGGGAGCGGGCGAGCCGGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCTGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCCCAACCGCTCgccgcc > 2:139407/1‑150 (MQ=255) cTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCgg > 2:717760/1‑150 (MQ=255) cGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAg < 1:592797/150‑1 (MQ=255) gggCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAgg < 1:717760/150‑1 (MQ=255) ggCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGgt > 2:486065/1‑150 (MQ=255) cccGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAAt > 1:437988/1‑150 (MQ=255) ccGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATc > 2:618941/1‑150 (MQ=255) ccGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATc < 2:437988/150‑1 (MQ=255) ccGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATc > 1:281550/1‑150 (MQ=255) ggTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCAccgcc < 2:71475/150‑1 (MQ=255) gTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCAccgccg > 2:686155/1‑150 (MQ=255) aTCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCca > 1:313169/1‑112 (MQ=255) aTCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCca < 2:313169/112‑1 (MQ=255) tCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCgg > 1:320221/1‑150 (MQ=255) aaaGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTAGTTCTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGcc > 2:104686/1‑150 (MQ=255) gCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGc < 2:281550/150‑1 (MQ=255) cacaTCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCtt > 2:76773/1‑150 (MQ=255) caTCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCt < 1:76773/150‑1 (MQ=255) tCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTgc < 1:422431/150‑1 (MQ=255) cGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCACCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTgcgc > 1:677869/1‑150 (MQ=255) cGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAAAGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTACTCCATGCCGCTGGGCACCGCCGTCGGCCGTGGCAGGCTCAAGCGCTTCTgcgc > 2:265005/1‑150 (MQ=255) ggCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGcc > 1:445599/1‑150 (MQ=255) gCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCca < 2:445599/150‑1 (MQ=255) tCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTgg < 2:638658/103‑1 (MQ=255) tCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTgg > 1:638658/1‑103 (MQ=255) tCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTc < 2:508036/129‑1 (MQ=255) tCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTc > 1:508036/1‑129 (MQ=255) tCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCt > 1:330859/1‑150 (MQ=255) ccATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCCCATCtt < 1:618941/150‑1 (MQ=255) ttGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCt > 1:229144/1‑135 (MQ=255) ttGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCt < 2:229144/135‑1 (MQ=255) cgccACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGccac < 1:686155/150‑1 (MQ=255) ccACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGccacca > 2:627426/1‑150 (MQ=255) cACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCAt < 2:264998/150‑1 (MQ=255) cTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCg > 1:551753/1‑134 (MQ=255) cTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCg < 2:551753/134‑1 (MQ=255) cAGGAACGCACTCAACCGCCGCAACCGCTCGCCACCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTgc > 2:80645/1‑118 (MQ=255) cAGGAACGCACTCAACCGCCGCAACCGCTCGCCACCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTgc < 1:80645/118‑1 (MQ=255) aGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTc < 1:661179/146‑1 (MQ=255) aGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTc > 2:661179/1‑146 (MQ=255) aaCGCACTCAACCGCCGCAACCGCTCGCCACCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCATg < 2:677869/150‑1 (MQ=255) cGCACCCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGATCAAGCGCTTCTCCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCATGGa < 1:139407/150‑1 (MQ=255) cACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCATGGata > 2:398614/1‑150 (MQ=255) aCTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCATGGatat > 2:571152/1‑150 (MQ=255) aCTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCATGGatat > 1:354184/1‑150 (MQ=255) cAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCATGGATATccc < 2:299746/150‑1 (MQ=255) aCCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCATGGATATCCCGt < 2:330859/150‑1 (MQ=255) cgccgcAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGGCGCCCATGGATATCCCGTAg < 1:509144/150‑1 (MQ=255) cgccTCGCCGGGTGCGCGGCCACAACAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCATGGATATCCCGTAGCCACGCGCCGCGGCaa < 2:553514/150‑1 (MQ=255) | TACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGCACCGCCGTCGGCCATGGCAGGCTCAAGCGCTTCTGCGCCACATCTTCGGCCACCATCAGCAGGTCGCCCATGGATATCCCGTAGCCACGCGCCGCGGCAA > NC_002947/6006630‑6006925 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |