Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 6,015,758 | G→C | 9.3% | I21M (ATC→ATG) | PP_5266 ← | acetyl‑CoA hydrolase family protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 6,015,758 | 0 | G | C | 9.3% | 127.8 / 4.4 | 43 | I21M (ATC→ATG) | PP_5266 | acetyl‑CoA hydrolase family protein |
Reads supporting (aligned to +/- strand): ref base G (16/23); new base C (2/2); total (18/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.76e-01 |
CGCCGCTGCAGGCCATCGCCCAGTGGCGGGCGGCCGAGGGAAAGTGCGGTATAGATGGTCAGGCGCCGTTCGGGCAGCTCGCGTACGCGGGCGTAAAGCGCGTTGACGAAGGCGTTGGGTTTCCCCAGGCCCAAAGGCAGGCCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTCGACAGCCTGGTCGATGGAGCAGAGGTGCATGGGGCCTCCTGAAACATCCGTGGGTTCAGGGGTTGGACATGAGCTCAAGCGGGTTGGTTGCCTAGGGCAAACTCTGGTCAACCCCAC > NC_002947/6015609‑6015907 | cgccgcTGCAGGCCATCGCCCAGTGGCGGGCGGCCGAGGGAAAGTGCGGTATAGATGGTCAGGCGCCGTTCGGGCAGCTCGCGTACGCGGGCGTAAAGCGCGTTGACGAAGGCGTTGGGTTTCCCCAGGCCCAAAGGCAGGCCCatatgg < 1:628356/150‑1 (MQ=255) ggCCATCGCCCAGTGGCGGGCGGCCGAGGGAAAGTGCGGTATAGATGGTCAGGCGCCGTTCGGGCAGCTCGCGTACGCGGGCGTAAAGCGCGTTGACGAAGGCGTTGGGTTTCCCCAGGCCCAAAGGCAGGCCCATATGGATATGGGCTg > 1:620071/1‑150 (MQ=255) gCCATCGCCCAGTGGCGGGCGGCCGAGGGAAAGTGCGGGATAGATGGTCAGGCGCCGTTCGGGCAGCTCGCGTACGCGGGCGTAAAGCGCGTTGACGAAGGCGTTGGGTTTCCCCAGGCCCAAAGGCAGGCCCATATGGATATGGGCTgg < 2:177154/150‑1 (MQ=255) aTCGCCCAGTGGCGGGCGGCCGAGGGAAAGTGCGGTATAGATGGTCAGGCGCCGTTCGGGCAGCTCGCGTACGCGGGCGTAAAGCGCGTTGACGAAGGACTCGGGTTCCCCCCGGCCCAAAGGCA‑GCCCATATCCATATGGGcctgcctt < 2:726939/150‑8 (MQ=255) cggcCGAGGGAAAGTGCGGTATAGATGGTCAGGCGCCGTTCGGGCAGCTCGCGTACGCGGGCGTAAAGCGCGTTGACGAAGGCGTTGGGTTTCCCCAGGCCCAAAGGCAGGCCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGc < 1:519250/150‑1 (MQ=255) ccGAGGGAAAGTGCGGTATAGATGGTCAGGCGCCGTTCGGGCAGCTCGCGTACGCGGGCGTAAAGCGCGTTGACGAAGGCGTTGGGTTTCCCCAGGCCCAAAGGCAGGCCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCt < 2:356411/148‑1 (MQ=255) ccGAGGGAAAGTGCGGTATAGATGGTCAGGCGCCGTTCGGGCAGCTCGCGTACGCGGGCGTAAAGCGCGTTGACGAAGGCGTTGGGTTTCCCCAGGCCCAAAGGCAGGCCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCt > 1:356411/1‑148 (MQ=255) gAGGGAAAGTGCGGTATAGATGGTCAGGCGCCGTTCGGGCAGCTCGCGTACGCGGGCGTAAAGCGCGTTGACGAAGGCGTTGGGTTTCCCCAGGCCCAAAGGCAGGCCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTCGAc > 2:112289/1‑150 (MQ=255) aGGGAAAGTGCGGTATAGATGGTCAGGCGCCGTTCGGGCAGCTCGCGTACGCGGGCGTAAAGCGCGTTGACGAAGGCGTTGGGTTTCCCCAGGCCCAAAGGCAGGCCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTCGACa > 1:105416/1‑150 (MQ=255) ggTATAGATGGTCAGGCGCCGTTCGGGCAGCTCGCGTACGCGGGCGTAAAGCGCGTTGACGAAGGCGTTGGGTTTCCCCAGGCCCAAAGGCAGGCCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTCGACAGc > 2:532494/1‑141 (MQ=255) ggTATAGATGGTCAGGCGCCGTTCGGGCAGCTCGCGTACGCGGGCGTAAAGCGCGTTGACGAAGGCGTTGGGTTTCCCCAGGCCCAAAGGCAGGCCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTCGACAGc < 1:532494/141‑1 (MQ=255) ggTATAGATGGTCAGGCGCCGGTCGGGCAGCTCGCGTACGCGGGCGTAAAGCGCGTTGACGAAGGCGTTGGGTTTCCCCAGGCCCAAAGGCAGGCCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTCGACAGCCTGGTCGAt < 1:112289/150‑1 (MQ=255) ataGATGGTCAGGCGCCGTTCGGGCAGCTCGCGTACGCGGGCGTAAAGCGCGTTGACGAAGGCGTTGGGTTTCCCCAGGCCCAAAGGCAGGCCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTCGACAGCCTGGTCGATGGa < 2:620071/150‑1 (MQ=255) ggTCAGGCGCCGTTCGGGCAGCTCGCGTACGCGGGCGTAAAGCGCGTTGACGAAGGCGTTGGGTTTCCCCAGGCCCAAAGGCAGGCCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTCGACAGCCTGGTCGATGGAGCagag > 2:392581/1‑150 (MQ=255) gcgcCGTTCGGGCAGCTCGCGTACGCGGGCGTAAAGCGCGTTGACGAAGGCGTTGGGTTTCCCCAGGCCCAAAGGCAGGCCCATATGGATATGGGCTGGCAGCCgg < 2:192027/106‑1 (MQ=255) gcgcCGTTCGGGCAGCTCGCGTACGCGGGCGTAAAGCGCGTTGACGAAGGCGTTGGGTTTCCCCAGGCCCAAAGGCAGGCCCATATGGATATGGGCTGGCAGCCgg > 1:192027/1‑106 (MQ=255) tgcCGTTCGGGCAGCTCGCGTACGCGGGCGTAAAGCGCGTTGACGAAGGCGTTGGGTTTCCCCAGGCCCAAAGGCAGGCCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTCGACAGCCTGGTCGATGGAGCAGAGGTGCATg < 1:187536/149‑1 (MQ=255) cgcCGTTCGGGCAGCTCGCGTACGCGGGCGTAAAGCGCGTTGACGAAGGCGTTGGGTTTCCCCAGGCCCAAAGGCAGGCCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTCGACAGCCTGGTCGATGGAGCAGAGGTGCATg < 1:498543/150‑1 (MQ=255) cgcCGTTCGGGCAGCTCGCGTACGCGGGCGTAAAGCGCGTTGACGAAGGCGTTGGGTTTCCCCAGGCCCAAAGGCAGGCCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTCGACAGCCTGGTCGATGGAGCAGAGGTGCATg < 1:372827/150‑1 (MQ=255) ccGTTCGGGCAGCTCGCGTACGCGGGCGTAAAGCGCGTTGACGAAGGCGTTGGGTTTCCCCAGGCCCAAAGGCAGGCCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTCGACAGCCTGGTCGATGGAGCAGAGGTGCATggg < 1:392581/150‑1 (MQ=255) gTTCGGGCAGCTCGCGTACGCGGGCGTAAAGCGCGTTGACGAAGGCGTTGGGTTTCCCCAGGCCCAAAGGCAGGCCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTCGACAGCCTGGTCGATGGAGCAGAGGTGCATgg < 1:223127/147‑1 (MQ=255) gTTCGGGCAGCTCGCGTACGCGGGCGTAAAGCGCGTTGACGAAGGCGTTGGGTTTCCCCAGGCCCAAAGGCAGGCCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTCGACAGCCTGGTCGATGGAGCAGAGGTGCATgg > 2:223127/1‑147 (MQ=255) cGGGCAGCTCGCGTACGCGGGCGTAAAGCGCGTTGACGAAGGCGTTGGGTTTCCCCTGTCGCAAAGCCAGGCCCAGATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTCGACAGCCTGGTCGATGGAGCAGAGGTGCATGGGGcctc < 2:289842/150‑1 (MQ=255) cgcgGGCGTAAAGCGCGTTGACGAAGGCGTTGGGTTTCCCCAGGCCCAAAGGCAGGCCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTCGACAGCCTGGTCGATGGAGCAGAGGTGCATGGGGCCTCCTGAAACATCCGTgg < 1:535866/150‑1 (MQ=255) gggCGTAAAGCGCGTTGACGAAGGCGTTGGGTTTCCCCAGGCCCAAAGGCAGGCCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTc < 2:230507/94‑1 (MQ=255) gggCGTAAAGCGCGTTGACGAAGGCGTTGGGTTTCCCCAGGCCCAAAGGCAGGCCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTc > 1:230507/1‑94 (MQ=255) gTAAAGCGCGTTGACGAAGGCGTTGGGTTTCTCCAGGCCCAAAGGCAGGCCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTCGACAGCTTGGTCGATGGAGCAGAGGTGCATGGGGCCTCCTGaaa < 1:609557/134‑1 (MQ=255) gTAAAGCGCGTTGACGAAGGCGTTGGGTTTCCCCAGGCCCAAAGGCAGGCCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTCGACAGCCTGGTCGATGGAGCAGAGGTGCATGGGGCCTCCTGaaa > 2:609557/1‑134 (MQ=255) ccAGGCCCAAAGGCAGGCCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTCGACAGCCTGGTCGATGGAGCAGAGGTGCATGGGGCCTCCTGAAACATCCGt > 2:165510/1‑109 (MQ=255) ccAGGCCCAAAGGCAGGCCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTCGACAGCCTGGTCGATGGAGCAGAGGTGCATGGGGCCTCCTGAAACATCCGt < 1:165510/109‑1 (MQ=255) ccAGGCCCAAAGGCAGGCCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTCGACAGCCTGGTCGATGGAGCAGAGGTGCATGGGGCCTCCTGAAACATCCGTGGGTTCAGGGGTTGGACATGAGCTCAAGCGGGTTGGTTGcc > 2:281232/1‑150 (MQ=255) ggCGCAAACGCAGGCCCACATGGCTTCGTTCTCGCATCCGGGACAAGACCTTCTCGACAGCCTGGTCGATGTAGCAGAGGTGCATGGGGCGTCCTGAAACATCCGTGGGTTCAGGGGTTGGACATGAGCTCAAGCGGGTTGGTTGCCTAg < 2:147737/150‑1 (MQ=255) ccAAAGGCAGGCCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTCGACAGCCTGGTCGATGGAGCAGAGGTGCATGGGGCCTCCTGAAACATCCGTGGGTTCa < 2:103811/110‑1 (MQ=255) ccAAAGGCAGGCCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTCGACAGCCTGGTCGATGGAGCAGAGGTGCATGGGGCCTCCTGAAACATCCGTGGGTTCa > 1:103811/1‑110 (MQ=255) cAAAGGCAGGCCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTCGACAGCCTGGTCGATGGAGCAGAGGTGCATGGGGCCTCCTGAAACATCCGTGGGTTCAGGGGTTGGACATGAGCTCAAGCGGGTTGGTTGCCTAGGGCa > 2:343348/1‑150 (MQ=255) aaaaGGCAGGCCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTCGACAGCCTGGTCGATGGAGCAGAGGTGCATGGGGCCTCCTGAAACATCCGTGGGTTCAGGGGTTGGACATGAGCTCAAGCGGGTTGGTTGCCTAGGGCa < 2:375686/149‑1 (MQ=255) aaaGGCAGGCCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTCGACAGCCTGGTCGATGGAGCAGAGGTGCATGGGGCCTCCTGAAACATCCGTGGGTTCAGGGGTTGGACATGAGCTCAAGCGGGTTGGTTGCCTAGGGCaa > 2:180128/1‑150 (MQ=255) cagcCCATATCCATATTGGCTGGCAGCCGGGACAAGACCTGCTCGACAGCCTGGTCGATGGAGCAGAGGTGCATGGGGCCTCCTGAAACATCCGTGGGTTCAGGGGTTGGACATGAGCTCAAGCgg < 1:659287/124‑1 (MQ=255) cagcCCATATCCATATTGGCTGGCAGCCGGGACAAGACCTGCTCGACAGCCTGGTCGATGGAGCAGAGGTGCATGGGGCCTCCTGAAACATCCGTGGGTTCAGGGGTTGGACATGAGCTCAAGCgg > 2:659287/3‑126 (MQ=255) aggcCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTCGACAGCCTGGTCGATGGAGCAGAGGTGCATGGGGCCTCCTGAAACATCCGTGGGTTCAGGGGTTGGACATGAGCTCAAGCGGGTTGGTTGCCTAGGGCAAACTCTg < 2:684476/150‑1 (MQ=255) ggcCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTCGACAGCCTGGTCGATGGAGCAGAGGTGCATGGGGCCTCCTGAAACATCCGTGTGTTCAGGGGTTGGACATGAGCTCAAGCGGGTTGGTTGCCTAGGGCAAACTCTgg < 1:281232/150‑1 (MQ=255) gcCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTCGACAGCCTGGTCGATGGAGCAGAGGTGCATGGGGCCTCCTGAAACATCCTTGCGTTCAGGGGTTGGACATGAGCCCACGCGGGTTGGTTGCCTAGGGCAAACTCTGGt < 2:105416/150‑1 (MQ=255) gcCCATATCCATATGGGCTGGCAGCCGGGACAAGACCTGCTCGACAGCCTGGTCGATGGAGCAGAGGTGCATGGGGCCTCCTGAAACATCCGTGGGTTGAGGTGTTGGACATGAGCTCAAGCGGGTTGGTTGCCTAGGGCAAACTCTGGt > 1:727177/1‑150 (MQ=255) ccATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTCGACAGCCTGGTCGATGGAGCAGAGGTGCATGGGGCCTCCTGAAACATCCGTGGGTTCAGGGGTTGGACATGAGCTCAAGCGGGTTGGTTGCCTAGGGCAAACTCTGGTCa > 2:105838/1‑150 (MQ=255) gatatggGCTGGCAGCCGGGACAAGACCTGCTCGACAGCCTGGTCGATGGAGCAGAGGTGCATGGGGCCTCCTGAAACATCCGTGGGTTCAGGGGTTGGACATGAGCTCAAGCGGGTTGGTTGCCTAGGGCAAACTCTGGTCAACCCCAc < 1:105838/150‑1 (MQ=255) | CGCCGCTGCAGGCCATCGCCCAGTGGCGGGCGGCCGAGGGAAAGTGCGGTATAGATGGTCAGGCGCCGTTCGGGCAGCTCGCGTACGCGGGCGTAAAGCGCGTTGACGAAGGCGTTGGGTTTCCCCAGGCCCAAAGGCAGGCCCATATGGATATGGGCTGGCAGCCGGGACAAGACCTGCTCGACAGCCTGGTCGATGGAGCAGAGGTGCATGGGGCCTCCTGAAACATCCGTGGGTTCAGGGGTTGGACATGAGCTCAAGCGGGTTGGTTGCCTAGGGCAAACTCTGGTCAACCCCAC > NC_002947/6015609‑6015907 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |