Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 59,270 | T→C | 9.0% | intergenic (‑86/+46) | PP_0050 ← / ← PP_0051 | hypothetical protein/sigma‑54 dependent transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 59,270 | 0 | T | C | 9.0% | 121.5 / 2.9 | 45 | intergenic (‑86/+46) | PP_0050/PP_0051 | hypothetical protein/sigma‑54 dependent transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base T (20/20); new base C (2/2); total (22/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.64e-01 |
TTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAGCGTGCGTTCACTCATGCCAAGATGACTGGCCAGTTCACTGCGCGAGCCTTTGAACTGCTCCAGCGC > NC_002947/59127‑59417 | ttGCCAGCGGTGTGCTGAGCATGAGCGCGGGGCAGATCACGGTTAGGGCTTTCTTCATTTTGAGGCGTTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGt > 2:123642/1‑150 (MQ=255) gCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCa < 1:663229/150‑1 (MQ=255) gAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAg < 2:327692/150‑1 (MQ=255) gAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAAGTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCgg < 1:509714/150‑1 (MQ=255) gAGCGCGGCGCAGATCACGGTTAGGGCTATCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTCATTGCCAGGTTCGGTTAAATGATCAGACCACGATTTTTCCCTTTCAGTGTCAGGGCGCAGGTCAAggcacgg > 2:207026/1‑145 (MQ=255) gcgcAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTc < 1:631141/150‑1 (MQ=255) gcAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTGACGTTGCCTTGGCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTg < 2:85648/150‑1 (MQ=255) aTCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTGTGGCGt > 1:31072/1‑150 (MQ=255) ggTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCttt < 2:459951/150‑1 (MQ=255) ttAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTttca < 1:112054/150‑1 (MQ=255) gggCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTttcagtt < 2:674818/150‑1 (MQ=255) cttcATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCg > 2:683422/1‑150 (MQ=255) ctctGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCTTTTTAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAgcggcgc > 2:258965/1‑149 (MQ=255) ccTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAgc < 2:91466/140‑1 (MQ=255) ccTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAgc > 1:91466/1‑140 (MQ=255) gTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTTTTTTTTTTTTTCAGGTCGCAGGTAACGGTCCGGTAAAGTCTGTCGTTCTTTCAGTTCAGCCCCAGCGCTTTCAAGCGGCGATACTgcct > 2:634624/1‑148 (MQ=255) tAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAgcgtgc < 2:447497/150‑1 (MQ=255) aaTCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAgcgtgcg > 2:206893/1‑150 (MQ=255) aTCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAACGTCCGGTAATGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAgcgtgcgt < 1:207026/150‑1 (MQ=255) tCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAGCGTGCGtt > 1:386026/1‑150 (MQ=255) aaGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAGCGTGCGTTCACTCATGc > 2:108872/1‑150 (MQ=255) gTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAGCGTGCGTTCACTCATGCCa > 1:204741/1‑150 (MQ=255) tATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCACTCAAAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAGCGTGCGTTCACTCATGCCaa > 2:442097/1‑150 (MQ=255) tATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAGCGTGCGTTCACTCATGCCaa > 2:310042/1‑150 (MQ=255) ttgattgCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCACTGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAGCGTGCGTTCACTCATGCCAAGa < 1:164342/150‑1 (MQ=255) attgCCAGGTTCGGTTAACTGATCAGACCACGCTTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAGCGTGCGTTCACTCATGCCAAGATGa < 2:498523/150‑1 (MQ=255) tgCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAGCGTGCGTTCACTCATGCCAAGATGACt < 1:206893/150‑1 (MQ=255) cAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAGCGTGCGTTCACTCATGCCAAGATGACTGGc < 1:310042/150‑1 (MQ=255) gTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTaaa > 1:571160/1‑52 (MQ=255) gTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTaaa < 2:571160/52‑1 (MQ=255) aaCTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAGCGTGCGTTCACTCATGCCAAGATGACTGGCCAGTTCACTgc < 1:123642/150‑1 (MQ=255) aCTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAGCGTGCGTTCACTCATGCCAAGATGACTGGCCAGTTCACTgcg > 1:417229/1‑150 (MQ=255) gATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAGCGTGCGTTCACTCATGCCAAGATGACTGGCCAGTTCACTGCGCGa < 2:204741/150‑1 (MQ=255) aTCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCTTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGACGATACAGCGTGCGTTCACTCATGCCAAGATGACTGGCCAGTTCACTGCGCGAg > 1:726931/1‑150 (MQ=255) aCCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCCTTCAAGCGGCGATACCGCGTGCGTTCACTCATGCCAAGATGACTGGCGCGTACACTGTGCGAGCCgtt < 2:31072/150‑1 (MQ=255) cACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAGCGTGCGTTCACTCATGCCAAGATGACTGGCCAGTTCACTGCGCGAGTCTTTGa > 1:300496/1‑150 (MQ=255) cACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAGCGTGCGTTCACTCATGCCAAGATGACTGGCCAGTTCACTGCGCGAGCCTTTGa > 1:85723/1‑150 (MQ=255) aCGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCt < 2:362206/79‑1 (MQ=255) aCGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCt > 1:362206/1‑79 (MQ=255) aCGATTTTTCCCTTCCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAGCGTGCGTTCACTCATGCCAAg > 2:525041/1‑117 (MQ=255) aCGATTTTTCCCTTCCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAGCGTGCGTTCACTCATGCCAAg < 1:525041/117‑1 (MQ=255) ttttCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAGCGTGCGTTCACTCATGCCAAGATGACTGGCCAGTTCACTGCGCGAGCCTTTGAACTGCt > 2:581635/1‑150 (MQ=255) tttCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAGCGTGCGTTCACTCATGCCAAGATGACTGGCCAGTTCACTGCGCGAGCCTTTGAACTGCTc < 2:417229/150‑1 (MQ=255) ccTTCCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAGCGTGCGTTCACTCATGCCAAGAt > 2:434140/1‑109 (MQ=255) ccTTCCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAGCGTGCGTTCACTCATGCCAAGAt < 1:434140/109‑1 (MQ=255) tttCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAGCGTGCGTTCACTCATGCCAAGATGACTGGCCAGTTCACTGCGCGAGCCTTTGAACTGCTCCAgcgc > 1:135830/1‑150 (MQ=255) | TTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAGCGTGCGTTCACTCATGCCAAGATGACTGGCCAGTTCACTGCGCGAGCCTTTGAACTGCTCCAGCGC > NC_002947/59127‑59417 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |