Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 882,022 | G→T | 8.5% | A512S (GCC→TCC) | PP_0765 → | hypothetical protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 882,022 | 0 | G | T | 8.5% | 173.9 / 3.0 | 55 | A512S (GCC→TCC) | PP_0765 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base G (25/25); new base T (3/2); total (28/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TCGGTGAAGTGGGTGTTACCCATGTCGGCGGCCTGGAGAATGCCCACGATACCCGCTACGGTCGCGACCCGGTGTTCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTACACCACCAGCACTTCCTGGGGTTACCGCGGCCGTGTCATCTGGGACTACAACGACGTATTCGCGGGTATCAACCTGAAGCCGAGCGTG > NC_002947/881879‑882171 | tCGGTGAAGTGGGTGTTACCCATGTCGGCGGCCTGGAGAATGCCCACGATACCCGCTACGGTCGCGACCCGGTGTTCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATcgccggcg < 1:406404/150‑1 (MQ=255) tGGGTGTTACCCATGTCGGCGGCCTGGAGAATGCCCACGATACCCGCTACGGTCGCGACCCGGTGTTCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGCTACCTGCGAGGAGCTCTACGGCAGCACCAGCTCCGGCGCCGGTGCgg > 2:270807/1‑150 (MQ=255) gggTGTTACCCATGTCGGCGGCCTGGAGAATGCCCACGATACCCGCTACGGTCGCGACCCGGTGTTCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTTAATGGCAGCACCATCGCCGGCGCCGGTGCggg > 2:369604/1‑150 (MQ=255) gggTGTTACCCATGTCGGCGGCCTGGAGAATGCCCACGATACCCGCTACGGTCGCGACCCGGTGTTCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCggc < 2:515561/150‑2 (MQ=255) ggTGTTACCCATGTCGGCGGCCTGGAGAATGCCCACGATACCCGCTACGGTCGCGACCCGGTGTTCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCgggg > 2:677873/1‑150 (MQ=255) tACCCATGTCGGCGGCCTGGAGAATGACCAGGTTACCCGCTACGGTCGCGACCCGGTGTTCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTc < 2:94358/150‑1 (MQ=255) ccATGTCGGCGGCCTGGAGAATGCCCACGATACCCGCTACGGTCGCGACCCGGTGTTCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCAc > 1:247664/1‑150 (MQ=255) ccATGTCGGCGGCCTGGAGAATGCCCACGATACCCGCTACGGTCGCGACCCGGTGTTCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGATACATGCCAGGCGCGCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCAc > 2:2421/1‑150 (MQ=255) aTGTCGGCGGCCTGGAGAATGCCCACGATACCCGCTACGGTCGCGACCCGGTGTTCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCg > 2:120277/1‑150 (MQ=255) aTGTCGGCGGCCTGGAGAATGCCCACGATACCCGCTACGGTCGCGACCCGGTGTTCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCg < 1:677873/150‑1 (MQ=255) ggAGAATGCCCACGATACCCGCTACGGTCGCGACCCGGTGTTCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTGCa < 1:751859/134‑1 (MQ=255) ggAGAATGCCCACGATACCCGCTACGGTCGCGACCCGGTGTTCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCa > 2:751859/1‑134 (MQ=255) gagaATGCCCACGATACCCGCTACGGTCGCGACCCGGTGTTCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGc > 1:528810/1‑150 (MQ=255) aaTGCCCACGATACCCGCTACGGTCGCGACCCGGTGTTCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCaaa < 1:270807/150‑1 (MQ=255) cccACGATACCCGCTACGGTCGCGACCCGGTGTTCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCg > 2:68705/1‑150 (MQ=255) cACGATACCCGCTACGGTCGCGACCCGGTGTTCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCgggg > 2:572814/1‑117 (MQ=255) cACGATACCCGCTACGGTCGCGAACCGGTGTTCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCgggg < 1:572814/117‑1 (MQ=255) aTACCCGCTACGGTCGCGACCCGGTGTTCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGCCCACCGCCAACCTGAACCGCAAATGCGAGAacg > 1:391504/1‑150 (MQ=255) cGCTACGGTCGCGACCCGGTGTTCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGc < 1:1936/150‑1 (MQ=255) cGCTACGGTCGCGACCCGGTGTTCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGc < 1:120277/150‑1 (MQ=255) cGCTACGGTCGCGACCCGGTGTTCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCATCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGc < 1:448030/150‑1 (MQ=255) ccgcgACCGGGTGTTCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTAcaccac < 2:104649/149‑1 (MQ=255) gcgACCCGGTGTTCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTACAccacca < 2:525713/150‑1 (MQ=255) ccGGTGTTCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTACACCACCAGCACt > 2:187922/1‑150 (MQ=255) cGGTGTTCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTACAccacca > 1:525652/1‑144 (MQ=255) cGGTGTTCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTACAccacca < 2:525652/144‑1 (MQ=255) gtTCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTacac < 1:258326/135‑1 (MQ=255) gtTCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTacac > 2:258326/1‑135 (MQ=255) gtTCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGCCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTACACCACCAGCACTTCCTg < 2:391504/150‑1 (MQ=255) tCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTACACCACCAGCACTTCCTggg < 1:460085/150‑1 (MQ=255) tCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTACACCACCAGCACTTCCTggg < 1:68705/150‑1 (MQ=255) ggTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTGAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTACACCACCAGCACTTCCTGGGGTTACcgc > 1:335813/1‑150 (MQ=255) gTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCATCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTACACCACCAGCACTTCCTGGGGTTACcgcg < 1:546394/150‑1 (MQ=255) gTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTACACCACCAGCACTTCCTGGGGTTACCTCGGCCg > 2:448539/1‑150 (MQ=255) gTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTACACCACCAGCACTTCCTGGGGTTACCGCGGCCg > 1:388277/1‑150 (MQ=255) cATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCTCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTACaccacc > 1:567591/1‑119 (MQ=255) cATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCTCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTACaccacc < 2:567610/119‑1 (MQ=255) cATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCTCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTACaccacc < 2:567591/119‑1 (MQ=255) cATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCTCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTACaccacc > 1:567610/1‑119 (MQ=255) aTCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAAc < 2:598599/82‑1 (MQ=255) aTCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAAc > 1:598599/1‑82 (MQ=255) ccACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTACACCACCAGCACTTCCTGGGGTTACCGCGGCCgtg < 2:678712/144‑1 (MQ=255) ccACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTACACCACCAGCACTTCCTGGGGTTACCGCGGCCgtg > 1:678712/1‑144 (MQ=255) cACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTACACCACCAGCACTTCCTGGGGTTACCGCGGc > 2:342256/1‑139 (MQ=255) cACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTACACCACCAGCACTTCCTGGGGTTACCGCGGc < 1:342256/139‑1 (MQ=255) aCCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTACACCACCAGCACTTCCTGGGGTTACCTCGGCCGTGTCATCTgg < 1:448539/150‑1 (MQ=255) cgcCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTACACCACCAGCACTTCCTGGGGTTACCGCGGCCGTGTCATCTGGGACTACaa < 1:18685/150‑1 (MQ=255) ccGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTACACCACCAGCACTTCCTGGGGTTACCGCGGCCGTGTCATCTGGGACTACAacg > 2:208757/1‑150 (MQ=255) gATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTACACCACCAGCACTTCCTGGGGTTACCGCGGCCGTGTCATCTGGGACTACAacgac < 1:208757/150‑1 (MQ=255) ccAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTACACCACCAGCACTTCCTGGGGTTACCGCGGCCGTGTCATCTGGGACTACAACGACGTATTcgc > 2:382084/1‑150 (MQ=255) aGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTACACCACCAGCACTTCCTGGGGTTACCGCGGCCGTGTCATCTGGGACTACAACGACGTATTCGCgg < 2:247664/150‑1 (MQ=255) ggCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTACACCACCAGCACTTCCTGGGGTTACCGCGGCCGTGTCATCTGGGACTACAACGACGTATTCGCggg > 2:418932/1‑150 (MQ=255) caCCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTACACCACCAGCACTTCCTGGGGTTACCGCGGCCGTGTCATCTgg < 2:138856/112‑1 (MQ=255) caCCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTACACCACCAGCACTTCCTGGGGTTACCGCGGCCGTGTCATCTgg > 1:138856/1‑112 (MQ=255) cATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGGACCGCAAATGCGAGAACGACGGCTACACCACCAGCACTTCCTGGGGTTACCGCGGGCGTGTCATCTGGGACTACAACGACGTATTCGCGGGTATCAACCTGAAGCCGAg > 1:716768/1‑150 (MQ=255) tCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTACACCACCAGCACTTCCTGGGGATACCGCGGCCGTATTAGTGTGGACTACAACGACGTATTCGCGGGTATCAACCTGAAGCCGAGCg > 1:356019/1‑150 (MQ=255) gccggcgccggTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTACACCACCAGCACTTCCTGGGGTTACCGCGGCCGTGTCATCTGGGACTACAACGACGTATTCGCGGGTATCAACCTGAAGCCGAGCGTg < 2:528810/150‑1 (MQ=255) | TCGGTGAAGTGGGTGTTACCCATGTCGGCGGCCTGGAGAATGCCCACGATACCCGCTACGGTCGCGACCCGGTGTTCGGCCCAGGTCCGTTGCCATCCACCGGTGGCGCCGATACCTGCCAGGCGCTCAATGGCAGCACCATCGCCGGCGCCGGTGCGGGGGCGTCCACCGCCAACCTGAACCGCAAATGCGAGAACGACGGCTACACCACCAGCACTTCCTGGGGTTACCGCGGCCGTGTCATCTGGGACTACAACGACGTATTCGCGGGTATCAACCTGAAGCCGAGCGTG > NC_002947/881879‑882171 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |