Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 908,132 | C→G | 8.0% | A28P (GCG→CCG) | yjjV ← | putative hydrolase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 908,132 | 0 | C | G | 8.0% | 149.6 / 2.9 | 49 | A28P (GCG→CCG) | yjjV | putative hydrolase |
Reads supporting (aligned to +/- strand): ref base C (22/23); new base G (2/2); total (24/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 |
ACCAGGTGCTCAGGGCGATGCTGGTCGAGGTAGACCGGGTGCAGGCCAAGCGCGGCGAACAGGCGCGGCTCGGCGCAGGCCAGTTCCCACACCCGCTGGAAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCGGGGAAGTCCAGGTGGGTGTGGGTGTCGATCAGGCGCATGTTCAGGCCACTGAGATGCGTTGCTTGAAGGTGCGGCCAACGGCGTGCACGCCGG > NC_002947/907984‑908268 | aCCAGGTGCTCAGGGCGATGCTGGTCGAGGTAGACCGGGTGCAGGCCAAGCGCGGCGAACAGGCGCGGCTCGGCGCAGGCCAGTTCCCACACCCGCTGGAAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGcgcc > 1:18318/1‑150 (MQ=255) cTCAGGGCGATGCTGGTCGAGGTAGACCGGGTGCAGGCCAAGCGCGGCGAACAGGCGCGGCTCGGCGCAGGCCAGTTCCCACACCCGCTGGCAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGtt < 2:630197/150‑1 (MQ=255) tCAGGGCGATGCTGGTCGAGGTAGACCGGGTGCAGGCCAAGCGCGGCGAACAGGCGCGGCTCGGCGCAGGCCAGTTCCCACACCCGCTGGAAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCATGCGCCGCCGCGTTg > 2:169786/1‑150 (MQ=255) tCAGGGCGATGCTGGTCGAGGTAGACCGGGTGCAGGCCAAGCGCGGCGAACAGGCGCGGCTCGGCGCAGGCCAGTTCCCACACCCGCTGGAAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTg > 1:198367/1‑150 (MQ=255) aGGGCGATGCTGGTCGAGGTAGACCGGGTGCAGGCCAAGCGCGGCGAACAGGCGCGGCTCGGCGCAGGCCAGTTCCCACACCCGCTGGAAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGc > 1:462340/1‑150 (MQ=255) cTGGTCGAGGTAGACCGGGTGCGGGCCAAGCGCGGCGAACAGGCGCGGCTCGGCGCAGGCCAGTTCCCACACCCGCTGGAAATTCGCCTGGTACCCCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGgcg < 1:410023/150‑1 (MQ=255) ggTAGACCGGGTGCAGGCCAAGCGCGGCGAACAGGCGCGGCTCGGCGCAGGCCAGTTCCCACACCCGCTGGAAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGt > 1:470709/1‑150 (MQ=255) tAGACCGGGTGCAGGCCAAGCGCGGCGAACAGGCGCGGCTCGGCGCAGGCCAGTTCCCACACCCGCTGGAAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCg < 2:466982/150‑1 (MQ=255) tAGACCGGGTGCAGGCCAAGCGCGGCGAACAGGCGCGGCTCGGCGCAGGCCAGTTCCCACACCCGCTGGAAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCAACGCGGCGGCGCGTGGGctg > 2:451288/1‑131 (MQ=255) tAGACCGGGTGCAGGCCAAGCGCGGCGAACAGGCGCGGCTCGGCGCAGGCCAGTTCCCACACCCGCTGGAAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCAACGCGGCGGCGCGTGGGctg < 1:451288/133‑3 (MQ=255) cGGGTGCAGGCCAAGCGCGGCGAACAGGCGCGGCTCGGCGCAGGCCAGTTCCCACACCCGCTGGAAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTc > 1:484135/1‑150 (MQ=255) gCAGGCCAAGCGCGGCGAACAGGCGCGGCTCGGCGCAGGCCAGTTCCCACACCCGCTGGAAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGt > 1:696/1‑150 (MQ=255) aGGCCAAGCGCGGCGAACAGGCGCGGCTCGGCGCAGGCCAGTTCCCACACCCGCTGGAAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCg > 1:96744/1‑150 (MQ=255) ggCCAAGCGCGGCGAACAGGCGCGGCTCGGCGCAGGCCAGTTCCCACACCCGCTGGAAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCATGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCgg < 1:169786/150‑1 (MQ=255) gCCAAGCGCGGCGAACAGGCGCGGCTCGGCGCAGGCCAGTTCCCACACCCGCTGGAAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCggg < 1:599556/150‑1 (MQ=255) gCCAAGCGCGGCGAACAGGCGCGGCTCGGCGCAGGCCAGTTCCCACACCCGCTGGAAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCggg < 2:96744/150‑1 (MQ=255) ccAAGCGCGGCGAACAGGTCCGGCGCGGCGCAGGCCAGTTCCCACACCCGCTGGCAATTCGCCTGCTACATCCCCAGCACCACCATTCGCTCCATCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCgggg < 1:228529/150‑1 (MQ=255) aaCAGGCGCGGCTCGGCGCAGGCCAGTTCCCACACCCGCTGGAAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCGGGGAAGTCCAggtgg < 1:250880/150‑1 (MQ=255) cAGGCGCGGCTCGGCGCAGGCCAGTTCCCACACCCGCTGGAAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCGGGGAAGTCCAggtgggt < 1:622673/150‑1 (MQ=255) aGGCGCGGCTCGGCGCAGGCCAGTTCCCACACCCGCTGGAAATTCAACTGCTAGAGCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGTGTCGAAGTCGGGGAAGTCCAggtgggtg < 2:395571/150‑1 (MQ=255) gcgcGGCTCGGCGCAGGCCAGTTCCCACACCCGCTGGAAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCGGGGAAGTCCAGgtgggtgtg > 1:146173/1‑150 (MQ=255) cgcgGCTCGGCGCAGGCCAGTTCCCACACCCGCTGGAAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCGGGGAAGTCCAGgtgggtgtgg < 2:612488/150‑1 (MQ=255) cgcgGCTCGGCGCAGGCCAGTTCCCACACCCGCTGGAAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCGGGGAAGTCCAGgtgggtgtgg < 1:251729/150‑1 (MQ=255) cgcgGCTCGGCGCAGGCCAGTTCCCACACCCGCTGGAAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCGGGGAAGTCCAGgtgggtgtgg < 2:462340/150‑1 (MQ=255) cgcAGGCCAGTTCCCACACCCGCTGGAAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCGGGGAAGTCCAGGTGGGTGTGGGTGTCGATCa > 1:146890/1‑150 (MQ=255) cAGTTCCCACACCCGCTGGAAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCGGGGAAGTCCAGGTGGGTGTGGGTGTCGATCAgg > 2:265040/1‑145 (MQ=255) cAGTTCCCACACCCGCTGGAAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCGGGGAAGTCCAGGTGGGTGTGGGTGTCGATCAgg < 1:265040/145‑1 (MQ=255) cAGTTCCCACACCCGCTGGAAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCGGGGAAGTCCAGGTGGGTGTGGGTGTCGATCAGGCGCAt > 1:34987/1‑150 (MQ=255) aGTTCCCACACCCGCTGGAAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGGCGGCGCGtgg < 1:458241/78‑3 (MQ=255) aGTTCCCACACCCGCTGGAAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGGCGGCGCGtgg > 2:458241/1‑76 (MQ=255) ttCCCACACCCGCTGGAAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCGGGGAAGTCCAGGTGGGTGTGGGTGTCGATCAg > 2:595925/1‑141 (MQ=255) ttCCCACACCCGCTGGAAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCGGGGAAGTCCAGGTGGGTGTGGGTGTCGATCAg < 1:595925/141‑1 (MQ=255) cacaCCCGCTGGAAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCGGGGAAGTCCAGGTGGGTGTGGGTGTCGATCAGGCGCATGTTCAgg < 1:6506/150‑1 (MQ=255) ccGCTGGAAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCGGGGAAGTCCAGGTGGGTGTGGGTGTCGATCAGGCGCATGTTCAGGCCACt > 1:518985/1‑150 (MQ=255) tCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCGGGGAAGTCCAGGTGGGTGTGGGTGTCGATCAGGCGAATGTTCAGGCCACTGAGATGCGTTg < 2:198367/150‑1 (MQ=255) cGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCGGGGAAGTCCAGGTGGGTGTGGGTGTCGATCAGGCGCATGTTCAGGCCACTGAGATGCGTTGc < 1:420760/150‑1 (MQ=255) ccTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCGGGGACGTCCAGGTGGGTGTGGGTGTCGATCAGGCGCATGTTCAGGCCACTGAGATGCGTTGCtt > 1:384815/1‑150 (MQ=255) cTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCGGGGAAGTCCAGGTGGGTGTGGGTGTCGATCAGGCGCATGTTCAGGCCACTGAGATGCGTTGCTTg > 2:564647/1‑150 (MQ=255) gTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCGGGGAAGTCCAGGTGGGTGTGGGTGTCGATCAGGCGCATGTTCAGGCCACTGAGATGCGTTGCTTGAAg < 2:436646/150‑1 (MQ=255) cccccAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCg > 2:224059/1‑77 (MQ=255) cccccAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCg < 1:224059/77‑1 (MQ=255) cccAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCGGGGAAGTCCAGGTGGGTGTGTGTGTCGATCAGGCGCATGTTCAGGCCACTGAGATGCGTTGCTTGAAGGTGCGGc > 2:356873/1‑150 (MQ=255) cccAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCGGGGAAGTCCAGGTGGGTGTGGGTGTCGATCAGGCGCATGTTCAGGCCACTGAGATGCGTTACTTGAAGGTGCGGc > 1:569218/1‑150 (MQ=255) ccAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCGGGGAAGTCCAGGTGGGTGTGGGTGTCGATCAGGCGCATGTTCAGGCCACTGAGATGCGTTGCTTGAAGGTGCGGcc > 2:416456/1‑150 (MQ=255) cAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCGGGGAAGTCCAggt < 1:573826/86‑1 (MQ=255) cAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCGGGGAAGTCCAggt > 2:573826/1‑86 (MQ=255) accaTTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCGGGGAAGTCCAGGTGGGTGTGGGTGTCGATCAGGCGCATGTTCAGGCCACTGAGATGCGTTGCTTGAAGGTGCGGCCAACGGCGt < 2:146173/150‑1 (MQ=255) tCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCGGGGAAGTCCAGGTGGGTGTGGGTGTCGATCAGGCGCATGTTCAGGCCACTGAGATGCGTTGCTTGAAGGTGAGGCCAACGGCGTGAACGTCgg > 1:299520/1‑150 (MQ=255) cACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCGGGGAAGTCCAggtgg < 2:714350/65‑1 (MQ=255) cACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCGGGGAAGTCCAggtgg > 1:714350/1‑65 (MQ=255) | ACCAGGTGCTCAGGGCGATGCTGGTCGAGGTAGACCGGGTGCAGGCCAAGCGCGGCGAACAGGCGCGGCTCGGCGCAGGCCAGTTCCCACACCCGCTGGAAATTCGCCTGGTACACCCCCAGCACCACCATTCGCTCCAGCCCACGCGCCGCCGCGTTGGCCAGCAGGCGCGGGCGGTCGGCGTCGAAGTCGGGGAAGTCCAGGTGGGTGTGGGTGTCGATCAGGCGCATGTTCAGGCCACTGAGATGCGTTGCTTGAAGGTGCGGCCAACGGCGTGCACGCCGG > NC_002947/907984‑908268 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |