New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2078281 | 35 (1.210) | 9 (0.330) | 9/250 | 1.9 | 25.0% | intergenic (+23/+92) | PP_1853/PP_1854 | LysR family transcriptional regulator/hypothetical protein |
? | NC_002947 | = 2078364 | 21 (0.770) | intergenic (+106/+9) | PP_1853/PP_1854 | LysR family transcriptional regulator/hypothetical protein |
CGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2078178‑2078281 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcctCTTCGCGGGCCCGCCCGCTCCCACAAGGACCCCACTGTCTTCAGGGCTGTGATATCCCTGTGGGTGCGGGCGGGCCCGCGAAAAGGCCGGCACAGGCAATAA < NC_002947/2078364‑2078263 CGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTCTTCGCGGGCCCGCCCGCTCCCACAAGGACCCCACTGTCTTCAGGG > 1:303563/1‑150 ATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTCTTCGCGGGCCCGCCCGCTCCCACAAGGACCCCACTGTCTTCAGGGCTGTGATAT > 1:350326/1‑150 CGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTCTTCGCGGGCCCGCCCGCTCCCACAAGGACCCCACTGTCTTCAGGGCTGTGATATCC > 2:115079/1‑150 TTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTCTTCGCGGGCCCGCCCGCTCCCACAAGGACCCCACTGTCTTCAGGGCTGTGATATCCCTGTG < 2:350326/150‑1 GTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTCTTCGCGGGCCCGCCCGCTCCCACAAGGACCCCACTGTCTTCAGGGCTGTGATATCCCTGTGGGTGC < 1:115079/150‑1 AGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTCTTCGCGGGCCCGCCCGCTCCCACAAGGACCCCACTGTCTTCAGGGCTGTGATATCCCTGTGGGTGCGGGC < 2:303563/150‑1 GGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCTCCCACAAGGGCCCCACTGTCTTCAGGGCTGTGATATCCCTGTGGGTGCGGGCGG < 1:505123/135‑1 GGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCTTTTCGCGGGCCCGCCCGCTCCCACAAGGGCCCCACTGTCTTCAGGGCTGTGATATCCCTGTGGGTGCGGGCGG > 2:505123/1‑135 GTTCGATGCCCTGCAGGCCTTTGAGAGAATTATTGTCTGAACCGGCCTCTGCGCGGGCCCGCCCGCTCCCACAAGGAACCCACTGTCTTCAGGGCTGTGATATCCCTGTGGGTGCGGGCGGGCCCGCGACATGGTCGGCACAGGCAATAA < 1:24902/150‑1 CGGGCGTTCATCGATTTTGTGGTGGAGCAGTTTGCCGAGCAGGGGCTGGCGGGGCGGTTCGATGCCCTGCAGGCCCTTTAGAGAATTATTGCCTGTGCCGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2078178‑2078281 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcctCTTCGCGGGCCCGCCCGCTCCCACAAGGACCCCACTGTCTTCAGGGCTGTGATATCCCTGTGGGTGCGGGCGGGCCCGCGAAAAGGCCGGCACAGGCAATAA < NC_002947/2078364‑2078263 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |