New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 358087 | 7 (0.240) | 5 (0.230) | 7/198 | 1.8 | 43.0% | intergenic (+52/‑78) | tdcG‑I/PP_5441 | L‑serine dehydratase/hypothetical protein |
? | NC_002947 | = 358099 | 8 (0.370) | intergenic (+64/‑66) | tdcG‑I/PP_5441 | L‑serine dehydratase/hypothetical protein |
AATCCGCACCATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCGATCGTCGGATGTCGCGATCAGTGTGGGCGTTG > NC_002947/357942‑358236 | aaTCCGCACCATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACt < 1:387277/150‑1 (MQ=255) cATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGGGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCc < 2:638125‑M2/150‑2 (MQ=255) gcgATACCGGCGCCGATATGCACGACAAGTACAAAGGGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCcctgta > 1:638125‑M2/1‑144 (MQ=255) cGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCcctgtaggagc > 2:575536‑M2/1‑137 (MQ=255) cGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCcctgtaggagc < 1:575536‑M2/148‑12 (MQ=255) gcgcCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCcctgtaggagcgggc > 2:568974‑M2/1‑135 (MQ=255) cACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGgattgcacagttcctgtaggagc > 2:259046‑M1/1‑112 (MQ=255) cACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTTcctgtaggagc > 1:259046‑M2/1‑124 (MQ=255) ggcggcCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTTcctgtaggagcggg > 1:409269‑M2/1‑97 (MQ=255) ggcggcCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTTcctgtaggagcggg < 2:409269‑M2/111‑15 (MQ=255) aGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGgattgcacagttcctgtagga < 2:665408‑M1/81‑22 (MQ=255) aGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGgattgcacagttcctgtagga > 1:665408‑M1/1‑60 (MQ=255) ttttCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCcctgtaggagcgggcttgcccgcgaagaggcc > 1:647287‑M2/1‑64 (MQ=255) ttttCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCcctgtaggagcgggcttgcccgcgaagaggcc < 2:647287‑M2/96‑33 (MQ=255) cTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGgattgcacagttcctgtaggagc > 1:275354‑M1/1‑48 (MQ=255) cTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGgattgcacagttcctgtaggagc < 2:275354‑M1/71‑24 (MQ=255) ggCCTCTTCGCGGGCAAGCCCGCTCCTACAGGgattgcacagttcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaa > 1:647287‑M1/1‑32 (MQ=255) ggCCTCTTCGCGGGCAAGCCCGCTCCTACAGGgattgcacagttcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaa < 2:647287‑M1/96‑65 (MQ=255) gagcgGGCTTGCCCGCTCCTACAGGAACTGTGCAATCCCTGTAGGAGTGGGCTTGCCCGCGAAGAGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCCATCGTggg > 2:581169/3‑150 (MQ=39) ggCAAGCCCGCTCCTACAGGAACTGTGCAATCCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCTTGAGGCTGATGCAg < 1:671687/80‑1 (MQ=255) ggCAAGCCCGCTCCTACAGGAACTGTGCAATCCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCTTGAGGCTGATGCAg > 2:671687/1‑80 (MQ=255) gCCCGCTCCTACAGGgattgcacagttcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagcactcgatagcgctgaccgccaggccgccgcgcgaggtctctttgtacttgtcgtgcatatcggcgc > 2:568974‑M1/1‑15 (MQ=255) cccGCTCCTACAGGaactgtgcaatccctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagcactcgatagcgctgaccgccaggccgcc < 2:409269‑M1/111‑98 (MQ=255) cccGCTCCTACAGGaactgtgcaatccctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagcactcgatagcgctgaccgccaggccgcc > 1:409269‑M1/1‑14 (MQ=255) gCTCCTACAGGgattgcacagttcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagcactcgatagcgctgaccgccaggccgccgcgcgaggtctctttgtacttgtcgtgcatatcggcgccg < 1:575536‑M1/148‑138 (MQ=255) gCTCCTACAGGgattgcacagttcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagcactcgatagcgctgaccgccaggccgccgcgcgaggtctctttgtacttgtcgtgcatatcggcgccg > 2:575536‑M1/1‑11 (MQ=255) gCTCCTACAGGaactgtgcaatccctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagcactcgatagcgctgaccgccaggccgccgcgcgaggtctctttgtacttgtcgtg > 1:259046‑M1/1‑11 (MQ=255) gCTCCTACAGGAACTGTGCAATCcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagcactcgatagcgctgaccgccaggccgccgcgcgaggtctctttgtacttgtcgtg > 2:259046‑M2/1‑23 (MQ=255) gCTCCTACAGGAACTGTGCAATCcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcag > 1:275354‑M2/1‑23 (MQ=255) gCTCCTACAGGAACTGTGCAATCcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcag < 2:275354‑M2/71‑49 (MQ=255) gCTCCTACAGGAACTGTGCAATCCCTGTAGGAGCGGGCTTGCCCGCGGAGAGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCGATCGTCGGATGTCGCGATCAgt > 1:331037/1‑150 (MQ=255) tCCTACAGGAACTGTGCAATCcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagcact > 1:665408‑M2/1‑21 (MQ=255) tCCTACAGGAACTGTGCAATCcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagcact < 2:665408‑M2/81‑61 (MQ=255) tACAGGgattgcacagttcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagcactcgatagcgctgaccgccaggccgccgcgcgaggtccctttgtacttgtcgtgcatatcggcgccggtatcgc > 1:638125‑M1/1‑6 (MQ=255) tACAGGAACTGTGCAATCCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGc > 2:376093/1‑87 (MQ=255) tACAGGAACTGTGCAATCCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGc < 1:376093/87‑1 (MQ=255) ggattgcacagttcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagcactcgatagcgctgaccgccaggccgccgcgcgaggtccctttgtacttgtcgtgcatatcggcgccggtatcgcgcatg < 2:638125‑M1/150‑150 (MQ=255) | AATCCGCACCATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCGATCGTCGGATGTCGCGATCAGTGTGGGCGTTG > NC_002947/357942‑358236 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |