New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5759460 = | 11 (0.380) | 7 (0.320) | 5/200 | 2.4 | 55.3% | intergenic (+13/+143) | trmL/secB | tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB |
? | NC_002947 | 5759552 = | 3 (0.140) | intergenic (+105/+51) | trmL/secB | tRNA (cytosine(34)‑2'‑O)‑methyltransferase TrmL/protein‑export protein SecB |
CTGGACAGCCTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAA > NC_002947/5759316‑5759542 | gcgctgatgctgtcgccggtcaacttcgacgccctgtacgcgcaagaaatgcagcgtatgcaggaagcgggtgaagcgcctactgtgcagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGCGGGc > 2:723298‑M1/145‑150 (MQ=255) aGCCTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTc < 1:634605/150‑1 (MQ=255) catcagcgccggtcaacttcgacgccctgtacgcgcaagaaatgcagcgtatgcaggaagcgggtgaagcgcctactgtgcagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGCGGGCCTCTTcg < 1:187469‑M1/13‑1 (MQ=255) ccTGCCGGCCGAGCATGGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTcgc < 1:107686/150‑1 (MQ=255) ccTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTcgc > 2:523535/1‑150 (MQ=255) cTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTcgcg < 2:623070/150‑1 (MQ=255) tgtcgccggtcaacttcgacgccctgtacgcgcaagaaatgcagcgtatgcaggaagcgggtgaagcgcctactgtgcagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGCGGGCCTCTTCGCgg > 2:705319‑M1/135‑150 (MQ=255) ggcgggccgAGCATCGCTTGCGCCTGCCGATGCGGACGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGCCCTCTTCGCgg < 2:3468/146‑1 (MQ=255) ggtcaacttcgacgccctgtacgcgcaagaaatgcagcgtatgcaggaagcgggtgaagcgcctactgtgcagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGCGGGCCTCTTCGCGGGTAAAcc < 1:262306‑M1/23‑1 (MQ=255) ttcgacgccctgtacgcgcaagaaatgcagcgtatgcaggaagcgggtgaagcgcctactgtgcagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGCgg > 1:139383‑M1/121‑124 (MQ=255) ttcgacgccctgtacgcgcaagaaatgcagcgtatgcaggaagcgggtgaagcgcctactgtgcagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGCgg < 2:139383‑M1/4‑1 (MQ=255) cgacgccctgtacgcgcaagaaatgcagcgtatgcaggaagcgggtgaagcgcctactgtgcagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGCGGGCCTCTTCGCGGGTAAACCCGCTCCTAc > 2:262306‑M1/119‑150 (MQ=255) ctgtacgcgcaagaaatgcagcgtatgcaggaagcgggtgaagcgcctactgtgcagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGCGGGCCTCTTCGCGGGTAAACCCGc > 2:253070‑M1/112‑137 (MQ=255) ctgtacgcgcaagaaatgcagcgtatgcaggaagcgggtgaagcgcctactgtgcagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGCGGGCCTCTTCGCGGGTAAACCCGc < 1:253070‑M1/26‑1 (MQ=255) gggTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCaa < 1:523535/150‑1 (MQ=255) aCCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGa > 2:322296/1‑146 (MQ=255) aCCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGa < 1:322296/146‑1 (MQ=255) agcgggtgaagcgcctactgtgcagtaattactgccgttttcaagaaagcgcctcttggggcgcttttttgttgccggcGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCggg > 2:313061‑M1/80‑150 (MQ=255) tGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGtt > 2:629876/1‑150 (MQ=255) cAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTAcc < 1:251230/150‑1 (MQ=255) ggTGGCGGTGACGGTCTATGAGGTGTGGCGGCAGAACGGGTTTGCCGGGAGCTGCTGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGaa < 2:710124/150‑1 (MQ=255) cagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGCGGGCCTCTTCGCGGGTAAAccc > 1:460287‑M1/58‑81 (MQ=255) cagtaattactgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGCGGGCCTCTTCGCGGGTAAAccc < 2:460287‑M1/24‑1 (MQ=255) tgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCgg < 1:210225‑M1/70‑1 (MQ=255) tgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCgg > 2:210225‑M1/48‑117 (MQ=255) tgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCcgc > 2:375918‑M1/48‑127 (MQ=255) tgccggtttcaagaaagcgcctctcggggcgcttttttgttgccggcGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCcgc < 1:375918‑M1/80‑1 (MQ=255) tttcaagaaagcgcctatcggggcgcttttttgttgccggcGCGGGCCTCTTCGCGGGTAAATCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCggg < 2:365577‑M1/71‑1 (MQ=255) tttcaagaaagcgcctatcggggcgcttttttgttgccggcGCGGGCCTCTTCGCGGGTAAATCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCggg > 1:365577‑M1/42‑112 (MQ=255) | CTGGACAGCCTGCCGGCCGAGCATCGCCTGCGCCTGCCGATGCGGCCGGGGTGCCGTAGCCTGAACCTGTCCAATACGGTGGCGGTGACGGTGTATGAGGCGTGGCGGCAGAACGGGTTTGCCGGGAGCTGATGTGTTGCCTGTGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACGCAGGCCGAGGGAACGGCGCAATCCCCTGTAGGAGCGGGTTTACCCGCGAA > NC_002947/5759316‑5759542 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |