New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3393681 =	30 (1.300)	5 (0.230)	7/232	NT	16.7%	coding (769/900 nt)	PP_2997	protein CnmA
	?	NC_002947	3393710 =	22 (1.030)					coding (740/900 nt)	PP_2997	protein CnmA

GGGCAGAAGCTGCTGGAAGCGGGATTGGCGCGGGCCGGGATCGAACGGCGGATCATGCTCGAGCTGCCAGCGTTTCTCGGGCTGGGGAAGATAATCGGGACTACCGACCTACTGGGCACCTTGCCGCGGCATATCGGGCAGACACTGGCCGATATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3393837‑3393681 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgatatgcCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATC  >  NC_002947/3393710‑3393853                                                                                                                                                                                                                                                                                                               GGGCAGAAGCTGCTGGAAGCGGGATTGGCGCGGGCCGGGATCGAACGGCGGATCATGCTCGAGCTGCCAGCGTTTCTCGGGCTGGGGAAGATAATCGGGACTACCGACCTACTGGGCACCTTGCCGCGGCATATCGGGCAGACACTGGCC                                                                                                                                                         >  1:424474/1‑150                                                                            CTCGGGCTGGGGAAGATAATCGGGACTACCGACCTACTGGGCACCTTGCCGCGGCATATCGGCCAGTGTCTGCCCGATATGC                                                                                                                                                  <  1:395565/82‑1                                                                            CTCGGGCTGGGGAAGATAATCGGGACTACCGACCTACTGGGCACCTTGCCGCGGCATATCGGCCAGTGTCTGCCCGATATGC                                                                                                                                                  >  2:395565/1‑82                                                                                                                                   ATATCGGGCAGACACTGGCCGATATGCCGCGGCAAGGTGCCCAGTAGGT                                                                                                                            <  1:545731/49‑1                                                                                                                                   ATATCGGGCAGACACTGGCCGATATGCCGCGGCAAGGTGCCCAGTAGGT                                                                                                                            >  2:545731/1‑49                                                                                                                                    TATCGGGCAGACACTGGCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGC                                                                                       >  1:86090/1‑85                                                                                                                                    TATCGGGCAGACACTGGCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGC                                                                                       <  2:86090/85‑1                                                                                                                                     ATCGGGCAGACACTGGCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGCGAACCACTGTGAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCCCTTCCAGCAGCTTCTG                     >  1:168156/1‑150                                                                                                                                                       GATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGAT   <  2:570595/150‑1                                                                                                                                                        ATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATC  >  1:413549/1‑150                                                                                                                                                                                                                                                                                                               GGGCAGAAGCTGCTGGAAGCGGGATTGGCGCGGGCCGGGATCGAACGGCGGATCATGCTCGAGCTGCCAGCGTTTCTCGGGCTGGGGAAGATAATCGGGACTACCGACCTACTGGGCACCTTGCCGCGGCATATCGGGCAGACACTGGCCGATATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3393837‑3393681 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgatatgcCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATC  >  NC_002947/3393710‑3393853

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.