New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3644951 =	16 (0.690)	5 (0.230)	5/240	NT	24.2%	intergenic (‑3/+63)	PP_3211/PP_3212	ABC transporter ATP‑binding protein/Rieske 2Fe‑2S family protein
	?	NC_002947	3644975 =	16 (0.720)					intergenic (‑27/+39)	PP_3211/PP_3212	ABC transporter ATP‑binding protein/Rieske 2Fe‑2S family protein

ATCGGACAAGCCCGGGTTGGTTATCCGTCGGCAACTACTGGGTCTGCTTGAAGCCCATGGCGAGAGCGAAGTGTTCCTCAGCCACTGACACTTGCCCAACGCCCCGGTGCGCCGGGGCATACACCACCGCTCATGACCCACGGGGAGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3645101‑3644951 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcgGTGGTGTATGCCCCGGCGCACCGGGGCGTTGGGCAAGTGTCAGTGGCTGAGGAACACTTCGCTCTCGCCATGGGCTTCAAGCAGACCCAGTAGTTGCCGACGGATAACCAACCCGGGCTTGTCCG  >  NC_002947/3644975‑3645099                                                                                                                                                                                                                                                                                      ATCGGACAAGCCCGGGTTGGTTATCCGTCGGCAACTACTAGGTCTGCTTGAAGCCCATGGCGAGAGCGAAGTGTTCCTCAGCCACTGACACTTGCCCAACGCCCCGGTGCGCCGGGGCATACACCACCGCTCATGACCCACGGGGAGAGC                                                                                                                                >  1:249918/1‑150                                                                                                                       ATACACCACCGCTCATGACCCACGGGGAGAGCGGTGGTGTATGCCCCGGCGCACCGGGGCGTTGGGCAAGTGTCAGTGGCTGAGGAACACTTCGCTCTCGCCATGGGCTTCAAGCAGACCCAGTA                                   >  1:554761/1‑125                                                                                                                       ATACACCACCGCTCATGACCCACGGGGAGAGCGGTGGTGTATGCCCCGGCGCACCGGGGCGTTGGGCAAGTGTCAGTGGCTGAGGAACACTTCGCTCTCGCCATGGGCTTCAAGCAGACCCAGTA                                   <  2:554761/125‑1                                                                                                                              ACCGCTCATGACCCACGGGGAGAGCGGTGGTGTATGCCCCGGCGCACCGGGGCGTTGGGCAAGTGTCAGTGGCTGAGGAACACTTCGCTCTCGCCATGGGCTTC                                                 >  1:269121/1‑104                                                                                                                              ACCGCTCATGACCCACGGGGAGAGCGGTGGTGTATGCCCCGGCGCACCGGGGCGTTGGGCAAGTGTCAGTGGCTGAGGAACACTTCGCTCTCGCCATGGGCTTC                                                 <  2:269121/104‑1                                                                                                                               CCGCTCATGACCCACGGGGAGAGCGGTGGTGTATGCCCCGGTGTATTGGGTCGTTGGGCAAGTGTCAGTGGCTGAGGAACACTTCGCTCTCGCCATGGGCTTCAAGCAGACCCAGTAGTTGCCGACGGATAACCAACCCGGGCTTGTCCG  >  1:569244/1‑150                                                                                                                                                                                                                                                                                      ATCGGACAAGCCCGGGTTGGTTATCCGTCGGCAACTACTGGGTCTGCTTGAAGCCCATGGCGAGAGCGAAGTGTTCCTCAGCCACTGACACTTGCCCAACGCCCCGGTGCGCCGGGGCATACACCACCGCTCATGACCCACGGGGAGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3645101‑3644951 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcgGTGGTGTATGCCCCGGCGCACCGGGGCGTTGGGCAAGTGTCAGTGGCTGAGGAACACTTCGCTCTCGCCATGGGCTTCAAGCAGACCCAGTAGTTGCCGACGGATAACCAACCCGGGCTTGTCCG  >  NC_002947/3644975‑3645099

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.