| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3778389 = | 28 (1.210) | 3 (0.130) | 3/242 | NT | 9.7% | coding (1400/2052 nt) | PP_3340 | TonB‑dependent receptor |
| ? | NC_002947 | 3778418 = | 29 (1.300) | coding (1429/2052 nt) | PP_3340 | TonB‑dependent receptor | |||||
GGCTCACTTCGCCAGAGGCGTCCTGACGCCAATAGGCCACGCGGCCATCGACCCAGCTGGCCGGGGTGAACTTGACGCCGGTTTCCCAGCCTTCGTTGATCGACGGGTCCAGGTCCTCGTTGCGCGGCGGCACCTTGTAGGCTGCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3778538‑3778389‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGA > NC_002947/3778418‑3778563 GGCTCACTTCGCCAGAGGCGTCCTGACGCCAATAGGCCACGCGGCCATCGACCCAGCTGGCCGGGGTGAACTTGACGCCGGTTTCCCAGCCTTCGTTGATCGACGGGTCCAGGTCCTCGTTGCGCGGCGGCACCTTGTAGGCTGCGGCGC > 1:297887/1‑150GGCTCACTTCGCCAGAGGCGTCCTGACGCCAATAGGCCACGCGGCCATCGACCCAGCTGGCCGGGGTGAACTTGACGCCGGTTTCCCAGCCTTCGTTGATCGACGGGTCCAGGTCCTCGTTGCGCGGCGGCACCTTGTAGGCTGCGGCGC < 1:349765/150‑1 GTCCAGGTCCTCGTTGCGCGGCGGCACCTTGTAGGCTGCGGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCT > 1:354315/1‑150 GTTGCGCGGCGGCACCTTGTAGGCTGCGGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTG > 1:178698/1‑67 GTTGCGCGGCGGCACCTTGTAGGCTGCGGCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTG < 2:178698/67‑1 GCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGA > 1:408056/1‑150 GCGCAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGA < 2:354315/150‑1 CAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGAT > 1:568166/1‑76 CAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGAT < 2:568166/76‑1 GGCTCACTTCGCCAGAGGCGTCCTGACGCCAATAGGCCACGCGGCCATCGACCCAGCTGGCCGGGGTGAACTTGACGCCGGTTTCCCAGCCTTCGTTGATCGACGGGTCCAGGTCCTCGTTGCGCGGCGGCACCTTGTAGGCTGCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3778538‑3778389‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcAACGAGGACCTGGACCCGTCGATCAACGAAGGCTGGGAAACCGGCGTCAAGTTCACCCCGGCCAGCTGGGTCGATGGCCGCGTGGCCTATTGGCGTCAGGACGCCTCTGGCGAAGTGAGCCGTCGCCTGAACGACCCCAGCGGCGA > NC_002947/3778418‑3778563 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |