New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3797840 | 34 (1.470) | 4 (0.180) | 4/238 | NT | 11.4% | coding (197/1449 nt) | vdh | vanillin dehydrogenase |
? | NC_002947 | = 3797929 | 30 (1.360) | coding (108/1449 nt) | vdh | vanillin dehydrogenase |
TGCGTGGTCATGGCTGCAGCCTCGCGCAGCATGTTGGCGGCCAACTTCACGTTGAAGCCATACCAGTTGGCCATGGCCCCGGTTTCACCGGCGGCGGCGATGAACTCGGCGGCCCTCGCCTGCAACAGATCAGCGCCTGCCAGCAAGCGGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3797687‑3797840 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgcCGCCGCCACACTGGCCGATGCCGATGCCGCGGTGGCTGCTGCCAGCGCGGCGTTTCCGGCCTGGGCCGCCCTGGCACCGGGCGAGCGGCGCAGCCGCTTGCTGGCAGGCGCTGATCTGTTGCAGGCGAGGGCCGCCGAGTTCATCGC < NC_002947/3797929‑3797783 TGCGTGGTCATGGCTGCAGCCTCGCGCAGCATGTTGGCGGCCAACTTCACGTTGAAGCCATACCAGTTGGCCATGGCCCCGGTTTCACCGGCGGCGGCGATGAACTCGGCGGCCCTCGCCTGCAACAGATCAGCGCCTGCCAGCAAGCGG < 2:139315/150‑1 TGCGTGGTCATGGCTACAGCCTCGCGCAGCATGTTGGCGGCCAACTTCACGTTGAAGCCATACCAGTTGGCCATGGCCCCGGTTTCACCGGCGGCGGCGATGAACTCGGCGGCCCTCGCCTGCAACAGATCAGCGCCTGCCAGCAAGCGG > 1:251947/1‑150 GCCATACCAGTTGGCCATGGCCCCGGTTTCACCGGCGGCGGCGATGAACTCGGCGGCCCTCGCCTGCAACAGATCAGCGCCTGCCAGCAAGCGGCTGCCGCCGCCACACTGGCCGATGCCGATGCCGCGGTGGCTGCTGCCAGCGCGGCG > 1:516775/1‑150 CCTCGCCTGCAACAGATCAGCGCCTGCCAGCAAGCGGCTGCCGCCGCCACACTGGCCGATGCCGATGCCGCGGTGGCTGCTGCCAGCGCGGCGTTTCCGGCCTGGGCCGCCCTGGCACCGGGCGA < 1:165977/125‑1 CCTCGCCTGCAACAGATCAGCGCCTGCCAGCAAGCGGCTGCCGCCGCCACACTGGCCGATGCCGATGCCGCGGTGGCTGCTGCCAGCGCGGCGTTTCCGGCCTGGGCCGCCCTGGCACCGGGCGA > 2:165977/1‑125 ACAGATCAGCGCCTGCCAGCAAGCGGCTGCCGCCGCCACACTGGCCGATGCCGATGCCGCGGTGGCTGCTGCCAGCGCGGCGTTTCCGGCCTGGGCCGCCCTGGCACCGGGCGAGCGGCGCAGCCGCTTGCTGGCAGGCGCTGATCTGTT < 2:516775/150‑1 TGCCGCCGCCACACTGGCCGATGCCGATGCCGCGGTGGCTGCTGCCAGCGCGGCGTTTCCGGCCTGGGCCGCCCTGGCACCGGGCGAGCGGCGCAGCCGCTTGCTGGCAGGCGCTGATCTGTTGCAGGCGAGGGCCGCCGAGTTCATCGC > 2:423292/1‑150 TGCGTGGTCATGGCTGCAGCCTCGCGCAGCATGTTGGCGGCCAACTTCACGTTGAAGCCATACCAGTTGGCCATGGCCCCGGTTTCACCGGCGGCGGCGATGAACTCGGCGGCCCTCGCCTGCAACAGATCAGCGCCTGCCAGCAAGCGGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3797687‑3797840 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgcCGCCGCCACACTGGCCGATGCCGATGCCGCGGTGGCTGCTGCCAGCGCGGCGTTTCCGGCCTGGGCCGCCCTGGCACCGGGCGAGCGGCGCAGCCGCTTGCTGGCAGGCGCTGATCTGTTGCAGGCGAGGGCCGCCGAGTTCATCGC < NC_002947/3797929‑3797783 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |