New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4303031 =	22 (0.950)	3 (0.140)	3/238	NT	12.5%	coding (178/207 nt)	PP_5627	hypothetical protein
	?	NC_002947	4303057 =	21 (0.950)					coding (204/207 nt)	PP_5627	hypothetical protein

TGGCTAGTATGGTGTTTTGGAAATACAACCAAAAAGCGCCACGAGTTATGGTCGTTATTTGTGAAACACCTAGTCGGCTATACCTACGCCAGTCAGCACCGG‑GCGCGCGCG‑GCGTACCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4303152‑4303031 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggtgCTGACTGGCGTAGGTATAGCCGACTAGGTGTTTCACAAATAACGACCATAACTCGTGGCGCTTTTTGGTTGTATTTCCAAAACACCATACTAGCCAGCACCGATTCCTGTTTCAGGATAGGTAGACTGTGACCCGCGCACGCTAGTGG  >  NC_002947/4303057‑4303204                                                                                                                                                                                                                                                                                  TGGCTAGTATGGTGTTTTGGAAATACAACCAAAAAGCGCCACGAGTTATGGTCGTTATTTGTGAAACACCTAGTCGGCTATACCTACGCCAGTCAGCACCGGTACGC‑CGCGCGCG‑CCCGGTGCTGACTGGCGTAGGTATAGCCGACTAGG                                                                                                                          <  1:549237/150‑1                                                                                ATACCTACGCCAGTCAGCACCGG‑GCGCGCGCG‑GCGTACCG                                                                                                                                                         >  1:136111/1‑40                                                                                ATACCTACGCCAGTCAGCACCGG‑GCGCGCGCG‑GCGTACCG                                                                                                                                                         <  2:136111/40‑1                                                                                                  ACCGG‑GCGCGCGCG‑GCGTACCGGTGCTGACTGGCGTAGGTATAGCCGACTAGGTGTTTCACAAATAACGACCATAACTCG                                                                                               >  1:518752/1‑80                                                                                                  ACCGG‑GCGCGCGCG‑GCGTACCGGTGCTGACTGGCGTAGGTATAGCCGACTAGGTGTTTCACAAATAACGACCATAACTCG                                                                                               <  2:518752/80‑1                                                                                                                       CCGGTGCTGACTGGCGTAGGTATAGCCGACTAGGTGTTTCACAAATAACGACCATAACTCGTGGCGCTTTTTGGTTGTATTTCCAAAACACCATACTAGCCAGCACCGATTCCTGTTTCAGGATAGGTAGACTGTGACCCGCGCACGCTA      >  2:18839/1‑150                                                                                                                           TGCTGACTGGCGTAGGTATAGCCGACTAGGTGTTTCACAAATAACGACCATAACTCGTGGCGCTTTTTGGTTGTATTTCCAAAACACCATACTAGCCAGCACCGATTCCTGTTTCAGGATAGGTAGACTGTGACCCGCGCACGCTAGTGG  <  2:387953/150‑1                                                                                                                                                                                                                                                                                  TGGCTAGTATGGTGTTTTGGAAATACAACCAAAAAGCGCCACGAGTTATGGTCGTTATTTGTGAAACACCTAGTCGGCTATACCTACGCCAGTCAGCACCGG‑GCGCGCGCG‑GCGTACCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4303152‑4303031 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggtgCTGACTGGCGTAGGTATAGCCGACTAGGTGTTTCACAAATAACGACCATAACTCGTGGCGCTTTTTGGTTGTATTTCCAAAACACCATACTAGCCAGCACCGATTCCTGTTTCAGGATAGGTAGACTGTGACCCGCGCACGCTAGTGG  >  NC_002947/4303057‑4303204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.