New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4349069 =	29 (1.250)	7 (0.310)	7/242	NT	24.1%	intergenic (‑390/+84)	PP_3820/galU	group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase
	?	NC_002947	4393427 =	16 (0.720)					intergenic (‑369/+101)	PP_3868/PP_3869	group II intron‑encoding maturase/sheath protein

CCGAAGGCTACATCGACGCGACCAACTTCTGCTTCGAGAACTACTACAAGACTGGCAAGGCTTACTGATAAGCCCTGCTGGCCTCAAAGCCATCCTTCGGGGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4349220‑4349069 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAGGCCCGCACTTGGCGGGCCTTGGTGGATGATTCAGTTACGATGCCGCGTACTGCAGGCGGGGCTGGTATTGCAGGGCAAGCAC  >  NC_002947/4393427‑4393575                                                                                                                                                                                                                                                                                                               CCGAAGGCTACATCGACGCGACCAACTTCTGCTTCGAGAACTACTACAAGACTGGCAAGGCTTACTGATAAGCCCTGCTGGCCTCAAAGCCATCCTTCGGGGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAAC                                                                                                                                                         <  1:240937/150‑1            ATCGACGCGACCAACTTCTGCTTCGAGAACTACTACAAGACTGGCAAGGCTTACTGATAAGCCCTGCTGGCCTCAAAGCCATCCTTCGGGGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCACTTGGCCA                                                                                                                                              >  1:101717/1‑150                          tTTCTGCTTCGAGAACTACTACAAGACTGGAAAGGCTTACTGATAAGTCCTGCTGGCCTCAAAGCCATCCTTCGGGGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCACTTGGCCACCACAACCAAGCGG                                                                                                                                <  2:101717/149‑1                           TTCTGCTTCGAGAACTACTACAAGACTGGCAAGGCTTACTCATAAGCCCTGCTGGCCTCAAAGCCATCCTTCGGTGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCACTTGGCCACCACAACCAAGCGGG                                                                                                                               <  1:348967/150‑1                                                                                            ATCCTTCGGGGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCACTTGGCCACCACAACCAAGCGGGTT                                                                                                                             <  1:491393/87‑1                                                                                            ATCCTTCGGGGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCCACTTGGCCACCACAACCAAGCGGGTT                                                                                                                             >  2:491393/1‑87                                                                                                                              ATGGCGCGTTGCGCGTAAGCGCAACCCACTTGGCCACCACAACCAAGCG                                                                                                                                 >  1:144429/1‑49                                                                                                                              ATGGCGCGTTGCGCGTAAGCGCAACCCACTTGGCCACCACAACCAAGCG                                                                                                                                 <  2:144429/49‑1                                                                                                                                                      CCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAGGCCCGCACTTGGCGGGCCTTGGTGGATGATTCAGTTACGATGCCGCGTACTGCAGGCGGGGCTGGTATTGCAGGGCAAGC    >  2:118595/1‑150                                                                                                                                                        CACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAGGCCCGCACTTGGCGGGCCTTGGTGGATGATTCAGTTACGATGCCGCGTACTGCAGGCGGGGCTGGTATTGCAGGGCAAGCAC  <  1:118595/150‑1                                                                                                                                                                                                                                                                                                               CCGAAGGCTACATCGACGCGACCAACTTCTGCTTCGAGAACTACTACAAGACTGGCAAGGCTTACTGATAAGCCCTGCTGGCCTCAAAGCCATCCTTCGGGGTGGCTTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAAGCGCAACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4349220‑4349069 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAGGCCCGCACTTGGCGGGCCTTGGTGGATGATTCAGTTACGATGCCGCGTACTGCAGGCGGGGCTGGTATTGCAGGGCAAGCAC  >  NC_002947/4393427‑4393575

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.