New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4561348 = | 30 (1.300) | 4 (0.180) | 4/234 | NT | 13.8% | coding (245/1404 nt) | PP_4048 | hypothetical protein |
? | NC_002947 | 4561414 = | 22 (1.020) | coding (179/1404 nt) | PP_4048 | hypothetical protein |
CGAGGAGCGGCCACTGAGCGTGGTCATCGCCGACATGCTGCTGTCGTTGGTGCCGGGGGTGGTGATTGTGCTCAGTGCCCGTGACCTGGCTGCGGTGTGCCTGCGCCTGGGCAAGCGCTACGCGGCGGACGGCAGCCAGGCAACGCCGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4561500‑4561348 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcagccAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCGGCGATGACCACGCTCAGTGGCCGCTCCTCGGCAAACTCGCCAAGCACCAGGTCACGCAGCCAGCCAAAGCCGTCGGCCACTTTTTCCACCGC > NC_002947/4561414‑4561562 CGAGGAGCGGCCACTGAGCGTGGTCATCGCCGACATGCTGCTGTCGTTGGTGCCGGGGGTGGTGATTGTGCTCAGTGCCCGTGACCTGGCTGCGGTGTGCCTGCGCCTGGGCAAGCGCTACGCGGCGGACGGCAGCCAGGCAACGCCGCA > 1:228208/1‑150 CGAGGAGCGGCCACTGAGCGTGGTCATCGCCGACATGCTGCTGTCGTTGGTGCCGGGGGTGGTGATTGTGCTCAGTGCCCGTGACCTGGCTGCGGTGTGCCTGCGCCTGGGCAAGCGCTACGCGGCGGACGGCAGCCAGGCAACGCCGCA < 2:440433/150‑1 CGAGGAGCGGCCACTGAGCGTGGTCATCGCCGACATGCTGCTGTCGTTGGTGCCGGGGGTGGTGATTGTGCTCAGTGCCCGTGACCTGGCTGCGGTGTGCCTGCGCCTGGGCAAGCGCTACGCGGCGGACGCCAGCCAGGCAACGCCGCA > 2:15852/1‑150 GCTCAGTGCCCGTGACCTGGCTGCGGTGTGCCTGCGCCTGGGCAAGCGCTACGCGGCGGACGGCAGCCAGGCAACGCCGCA < 1:387338/81‑1 GCTCAGTGCCCGTGACCTGGCTGCGGTGTGCCTGCGCCTGGGCAAGCGCTACGCGGCGGACGGCAGCCAGGCAACGCCGCA > 2:387338/1‑81 GTGTGCCTGCGCCTGGGCAAGCGCTACGCGGCGGACGGCAGCCAGGCAACGCCGCAGCCAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCGGCGATGACCACGCTCAGTGGCCGCTCCTCGGCAA > 1:486662/1‑150 TGTGCCTGCGCCTGGGCAAGCGCTACGCGGCGGACGGCAGCCAGGCAACGCCGCAGCCAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCGGCGATGACCACGCTCAGTGGCCGCTCCTCGGCAAA < 2:486662/150‑1 CTGCGCCTGGGCAAGCGCTACGCGGCGGACGGCAGCCAGGCAACGCCGCAGCCAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCGGCGATGACCACGCTCAGTGGCCGCTCCTCGGCAAACTC > 1:311014/1‑148 CTGCGCCTGGGCAAGCGCTACGCGGCGGACGGCAGCCAGGCAACGCCGCAGCCAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCGGCGATGACCACGCTCAGTGGCCGCTCCTCGGCAAACTC < 2:311014/148‑1 CAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCGGCGATGACCACGCTCAGTGGCCGCTCCTCGGCAAACTCGCCAAGCACCAGGTCACGCAGCCAGCCAAAGCCGTCGGCCACTTTTTCCACCGC > 1:363123/1‑150 CGAGGAGCGGCCACTGAGCGTGGTCATCGCCGACATGCTGCTGTCGTTGGTGCCGGGGGTGGTGATTGTGCTCAGTGCCCGTGACCTGGCTGCGGTGTGCCTGCGCCTGGGCAAGCGCTACGCGGCGGACGGCAGCCAGGCAACGCCGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4561500‑4561348 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcagccAGGTCACGGGCACTGAGCACAATCACCACCCCCGGCACCAACGACAGCAGCATGTCGGCGATGACCACGCTCAGTGGCCGCTCCTCGGCAAACTCGCCAAGCACCAGGTCACGCAGCCAGCCAAAGCCGTCGGCCACTTTTTCCACCGC > NC_002947/4561414‑4561562 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |