| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4643020 | 16 (0.690) | 4 (0.190) | 3/232 | NT | 20.1% | intergenic (+20/‑160) | PP_4107/PP_4108 | LysR family transcriptional regulator/4‑aminobutyrate aminotransferase |
| ? | NC_002947 | = 4643043 | 17 (0.790) | intergenic (+43/‑137) | PP_4107/PP_4108 | LysR family transcriptional regulator/4‑aminobutyrate aminotransferase | |||||
CACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4642884‑4643020‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcctctTCGCGGGCAAGCCCGCTCCTGCCAGAGGCCGGGGCAGGTCAAATCAATCGCCTTCAGCCACCCGCTCCCGGATCCACTGCACGAAGGCCCTGATCTTGGGCACTTCGGCCGCATGCTCGGCATGCGCGATGAAGTGCCTCCCGTTGCTT < NC_002947/4643043‑4642895 CACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCC < 1:534377/129‑1CACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCC > 2:534377/1‑129 GGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCTATTGATTTGACCTGCCCCGGCCTCTTCGCGGGCAAGCCCGCTCCTGCCAGAGGCCcc < 2:307617/150‑3 CACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTTCGCGGGCAAGCCCGCTCCTGCCAGAGGCCGGGGCAG < 1:172956/150‑1 TCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTTCGCGGGCAAGCCCGCTCCTGCCAGAGGCCG < 1:381656/140‑1 TCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCTTCGCGGGCAAGCCCGCTCCTGCCAGAGGCCG > 2:381656/1‑140 CCGGCCTCTTCGCGGGCAAGCCCGCTCCTGCCAGAGGCCGG < 1:175853/41‑1 CCGGCCTCTTCGCGGGCAAGCCCGCTCCTGCCAGAGGCCGG > 2:175853/1‑41 GCCTCTTCGCGGGCAAGCCCGCTCCTGCCAGAGGCCGGG < 1:471350/39‑1 GCCTCTTCGCGGGCAAGCCCGCTCCTGCCAGAGGCCGGG > 2:471350/1‑39 TTCGCGGGCAAGCCCGCTCCTGCCAGAGGCCGGAGCAGGTCAAATCAATCGCCTTCAGCCACCCGCTCCCGGATCCACTGCACGAAGGCCCTGATCTTGGGCACTTCGGCCGCATGCTCGGCATGCGCGATGAAGTGCCTCCCGTTGCTT < 1:408636/150‑1 CACCCTGTGGCAAGCAACGGGAGGCACTTCATCGCGCATGCCGAGCATGCGGCCGAAGTGCCCAAGATCAGGGCCTTCGTGCAGTGGATCCGGGAGCGGGTGGCTGAAGGCGATTGATTTGACCTGCCCCGGCCTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4642884‑4643020‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcctctTCGCGGGCAAGCCCGCTCCTGCCAGAGGCCGGGGCAGGTCAAATCAATCGCCTTCAGCCACCCGCTCCCGGATCCACTGCACGAAGGCCCTGATCTTGGGCACTTCGGCCGCATGCTCGGCATGCGCGATGAAGTGCCTCCCGTTGCTT < NC_002947/4643043‑4642895 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |