| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4957617 | 24 (1.040) | 6 (0.290) | 6/220 | NT | 19.0% | intergenic (‑55/+108) | fliH/fliG | flagellar assembly protein FliH/flagellar motor switch protein |
| ? | NC_002947 | = 4957677 | 30 (1.470) | intergenic (‑115/+48) | fliH/fliG | flagellar assembly protein FliH/flagellar motor switch protein | |||||
TTCGGGCTCCGGTTCCGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4957458‑4957617‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgtaggagcgggttTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCTCCTACAAGGGACCGTGTCGGCCGAACATGGTTT < NC_002947/4957677‑4957577 TTCGGGCTCCGGTTCCGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTA < 1:85942/150‑1 CGGTTCCGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGT < 1:498944/150‑1 GGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGG < 1:600282/143‑1 GGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGG > 2:600282/1‑143 TGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGGGCGGGTT > 1:235752/1‑80 TGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTT < 2:235752/80‑1 CTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACC < 1:150669/132‑1 CTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACC > 2:150669/1‑132 ACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCT < 1:561351/107‑1 ACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCT > 2:561351/1‑107 GTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCTCCTACAAGGGACCGTGTCGGCCGAACATGGTTT > 1:4079/1‑104 GTTTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCTCCTACAAGGGACCGTGTCGGCCGAACATGGTTT < 2:4079/104‑1 TTCGGGCTCCGGTTCCGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACGGATCAGGTCGCTGGGGTGGTGTTCTTTGGTGGGCATGCTGTCATGTTCTCAAACCATGTTCGGCCGACACGGTCCCTTGTAGGAGCGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4957458‑4957617‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgtaggagcgggttTACCCGCGAAGGCGTCGGTCCTGGCAATCGAGGTTGTCGCTGCCGACGCATTCGCGGGTGAACCCGCTCCTACAAGGGACCGTGTCGGCCGAACATGGTTT < NC_002947/4957677‑4957577 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |