New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5288442 =	21 (0.910)	3 (0.170)	3/190	NT	16.7%	intergenic (‑75/+109)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B
	?	NC_002947	5288536 =	14 (0.800)					intergenic (‑169/+15)	PP_4660/mdaB	LysR family transcriptional regulator/drug activity modulator B

CCGGATGTGCCGGCGGCGTTGGCAGCTTATGAGGCCCATCTGGACAAGGTGTTTGGCAAGGCACAGTAATTTTATGTCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5288619‑5288442 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCCCAG  >  NC_002947/5288536‑5288670                                                                                                                                                                                                                                                                                                                           CCGGATGTGCCGGCGGCGTTGGCAGCTTATGAGGCCCATCTGGACAAGGTGTTTGGCAAGGCACAGTAATTTTATGTCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTG                                                                                                                                                                     <  2:272812/150‑1   GGATGTGCCGGCGGCGTTGGCAGCTTATGAGGCCCATCTGGACAAGGTGTTTGGCAAGGCACAGTAATTTTATGTCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTG                                                                                                                                                                   <  2:455710/150‑1                       CAGCTTATGAGGCCCATCTGGACAAGGTGTTTGGCAAGGCACAGTAATTTTATGTCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAA                                                                                                                                               >  1:446414/1‑150                       CAGCTTATGAGGCCCATCTGGACAAGGTGTTTGGCAAGGCACAGTAATTTTATGTCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAA                                                                                                                                               <  2:403761/150‑1                           TTATGAGGCCCATCTGGACAAGGTGTTTGGCAACGCACACTAATTTTATGTCTGTACCGGCCTCTTCGCGGGATTGCCCCCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAAGAGG                                                                                                                                           <  1:65190/150‑1                                                                                 TACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCC                                                                                                                                                    <  1:223024/87‑1                                                                                 TACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCC                                                                                                                                                    >  2:223024/1‑87                                                                                                       CCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGG                                                                                       >  1:154783/1‑126                                                                                                       CCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGG                                                                                       <  2:154783/126‑1                                                                                                         CGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGC                                                             >  1:174751/1‑150                                                                                                                                                         GGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCG             <  1:272812/150‑1                                                                                                                                                               GGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACA                                  >  1:467890/1‑123                                                                                                                                                               GGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACA                                  <  2:467890/123‑1                                                                                                                                                                    GCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCCCAG  <  2:174751/150‑1                                                                                                                                                                                GCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAG                                 <  1:505290/107‑1                                                                                                                                                                                GCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAG                                 >  2:505290/1‑107                                                                                                                                                                                                                                                                                                                           CCGGATGTGCCGGCGGCGTTGGCAGCTTATGAGGCCCATCTGGACAAGGTGTTTGGCAAGGCACAGTAATTTTATGTCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGTATTACGCAGGTTTCAAGGACTTTGCAGTACTTGTGGGAGCGGGCAAGCCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5288619‑5288442 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGGCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCCCAG  >  NC_002947/5288536‑5288670

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.