New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5306259 = | 18 (0.780) | 3 (0.130) | 3/242 | NT | 14.1% | coding (1041/3483 nt) | recC | multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit |
? | NC_002947 | 5306292 = | 19 (0.850) | coding (1008/3483 nt) | recC | multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit |
TACCAGGGCGTGTTCAGCGACGGCCGCATCGACCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5306294‑5306259 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgGTAGCTGCCTGGGTCATCATAGCTGTCGAGCAGGTTGATGTAGTCGCGGCCTTGTTTACCCCAGGCTGCCAGCAACGGGTGGGCATGCTGGTGCAGCGTCTGGTCGTCCAGTTGCAGGGGCATGCCTTGCTTGCGTTGCTGGCGTTT > NC_002947/5306292‑5306438 TACCAGGGCGTGTTCAGCGACGGCCGCATCGACCTGGTAGCTGCCTGGGTCATCATAGCTGTCGAGCAGGTCGATGTAGTCGCGGCCTTGTTTACCCCAGGCTGCCAGCAACGGGTGGGCATGCTGGTGCAGCGTCTGGTAGTCCAGTTG > 2:20583/1‑150 CAGGGCGTGTTCAGCGACGGCCGCATCGACCTGGTAGCTGCCTGGGTCATCATAGCTGTCGAGCAGGTTGATGTAGTCGCGGCCTTGTTTACCCCAGGCTGCCAGCAACGGGTGG > 1:565319/1‑115 CAGGGCGTGTTCAGCGACGGCCGCATCGACCTGGTAGCTGCCTGGGTCATCATAGCTGTCGAGCAGGTTGATGTAGTCGCGGCCTTGTTTACCCCAGGCTGCCAGCAACGGGTGG < 2:565319/115‑1 CTGGTAGCTGCCTGGGTCATCATAGCTGTCGAGCAGGTTGATGTAGTCGCGGCCTTGTTTACCCCAGGCTGCCAGCAACGGGTGGGCATGCTGGTGCAGCGTCTGGTCGTCCAGTTGCAGGGGCATGCCTTGCTTGCGTTGCTGGCGTTT < 1:366156/150‑1 TACCAGGGCGTGTTCAGCGACGGCCGCATCGACCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5306294‑5306259 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgGTAGCTGCCTGGGTCATCATAGCTGTCGAGCAGGTTGATGTAGTCGCGGCCTTGTTTACCCCAGGCTGCCAGCAACGGGTGGGCATGCTGGTGCAGCGTCTGGTCGTCCAGTTGCAGGGGCATGCCTTGCTTGCGTTGCTGGCGTTT > NC_002947/5306292‑5306438 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |