New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 620579 | 18 (0.780) | 3 (0.140) | 3/238 | NT | 16.6% | coding (114/693 nt) | PP_0534 | transcriptional regulator PfeR |
? | NC_002947 | = 620643 | 13 (0.590) | coding (50/693 nt) | PP_0534 | transcriptional regulator PfeR |
ATGCGGTCCTGCTCGGCCCCTAGTGCCGACATCAGCATGACCGGCACTGCCTGCTGGCGGCGCAGGGCGTCGAGCAGGCTGAGGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/620427‑620579 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcaggACCTGGACCGCCATTTCCGCAACCGCGGTTTCCTGGTGCACGCCTGCGCCAGCGGCACCCAGGCCCTGAATGCCATACAGCAATCTCAGTTCGAACTGGTGCTGCTGGACATCATGCTGCCAGGCATCGACGGCCTCAGCCTGCTCGAC < NC_002947/620643‑620495 ATGCGGTCCTGCTCGGCCCCTAGTGCCGACATCAGCATGACCGGCACTGCCTGCTGGCGGCGCAGGGCGTCGAGCAGGCTGAGGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTC < 1:388781/150‑1 ATGAGGTCCTGCTCGGCCCCTAGTGCCGACATCAGCATGACCGGCACTGCCTGCTGGCGGCGCAGGGCGTCGAGCAGGCTGAGGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTC > 1:87339/1‑150 TGCTGGCGGCGCAGGGCGTCGAGCAGGCTGAGGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGACCTGGACCGCCATTTCCGCAACCGCGGTTTCCTGGTGCACGCCTGCG > 2:398279/1‑150 CAGGCTGAGGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGACCTGGACCGCCATTTCCGCAACCGCGGTTTCCTGGTGCACGCCTGCGCCAGCGGCACCCAGGCCCTGAAT < 1:482606/150‑1 GGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGGACCTGGACCGCCATTTCCGCAACCGCGGTTTCCTGGTGCACGCCTGCGCCAGCGGCACCCAGGCCCTGAATGCCATACA < 1:398279/150‑1 TCAGGACCTGGACCGCCATTTCCGCAACCGCGGTTTCCTGGTGCACGCCTGCGCCAGCGGCACCCAGGCCC < 1:485772/71‑1 TCAGGACCTGGACCGCCATTTCCGCAACCGCGGTTTCCTGGTGCACGCCTGCGCCAGCGGCACCCAGGCCC > 2:485772/1‑71 CAGGACCTGGACCGCCATTTCCGCAACCGCGGTTTCCTGGTGCACGCCTGCGCCAGCGGCACCCAGGCCCTGAATGCCATACAGCAATCTCAGTTCGAACTGGTGCTGCTGGACATCATGCTGCCAGGCATCGACGGCCTCAGCCTGCTC > 1:466026/1‑150 GGACCTGGACCGCCATTTCCGCAACCGCGGTTTCCTGGTGCACGCCTGCGCCAGCGGCACCCAGGCCCTGAATGCCATACAGCAATCT < 1:116958/88‑1 GGACCTGGACCGCCATTTCCGCAACCGCGGTTTCCTGGTGCACGCCTGCGCCAGCGGCACCCAGGCCCTGAATGCCATACAGCAATCT > 2:116958/1‑88 GACCTTGACCGCGATTTCCGCAACCGCGGTTGCCTGGTGCACGCCTGCGGCAGCGGCACCCAGGCCCTGAATGCCATACAGCAATCTCAGTGCGGACTGGTTCTGCTGGACATCATGCTGCCAGGCATCGACGGCCTCAGCCTtcgggag > 2:23321/1‑143 ATGCGGTCCTGCTCGGCCCCTAGTGCCGACATCAGCATGACCGGCACTGCCTGCTGGCGGCGCAGGGCGTCGAGCAGGCTGAGGCCGTCGATGCCTGGCAGCATGATGTCCAGCAGCACCAGTTCGAACTGAGATTGCTGTATGGCATTCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/620427‑620579 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcaggACCTGGACCGCCATTTCCGCAACCGCGGTTTCCTGGTGCACGCCTGCGCCAGCGGCACCCAGGCCCTGAATGCCATACAGCAATCTCAGTTCGAACTGGTGCTGCTGGACATCATGCTGCCAGGCATCGACGGCCTCAGCCTGCTCGAC < NC_002947/620643‑620495 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |