New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1362413 | 30 (1.300) | 4 (0.180) | 3/234 | NT | 11.6% | coding (797/1347 nt) | phoQ | sensor protein |
? | NC_002947 | = 1362442 | 33 (1.530) | coding (826/1347 nt) | phoQ | sensor protein |
ACCCACGCGAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1362257‑1362413 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcagcaCCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAGCTTTCACCCACGCCCTGCAGCACCGCCAGCGGCGTCTTCAGGCTGTGCGCCAGGTCGTCCAGCGAATCACGGTAGCGCGTGCGCTGCTCACGCTCACTGCGCAACAGACGG < NC_002947/1362442‑1362294 ACCCACGCGAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCT > 1:396811/1‑150 ACGCGATTTGCTGCGCCTTACCCGCGCGCTCAACCGTCTGTTGCGCAGTGAGCTTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCA > 2:486056/1‑150 ACGCGAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCA > 1:268303/1‑150 ACGCGAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCA < 2:396811/150‑1 TGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGC > 1:395398/1‑150 TTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAA < 2:395398/150‑1 GCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAA > 1:359111/1‑109 GCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAA < 2:359111/109‑1 GCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCA > 1:98669/1‑69 GCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCA < 2:98669/69‑1 CAGCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAGCTTTCACCCACGCCCTGCAGCACCGCCAGCGGCGTCTTCAGGCTGTGCGCCAGGTCGTCCAGCGAATCACGGTAGCGCGTGCGCTGCTCACGCTCACTGCGCAACAG > 2:92751/1‑150 GCACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAGCTTTCACCCACGCCCTGCAGCACCGCCAGCGGCGTCTTCAGGCTGTGCGCCAGGTCGTCCAGCGAATCACGGTAGCGCGTGCGCTGCTCACGCTCACTGCGCAACAGAC < 2:457358/150‑1 ACCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAGCTTTCACCCACGCCCTGCAGCACCGCCAGCGGCGTCTTCAGGCTGTGCGCCAGGTCGTCCAGCGAATCACGGTAGCGCGTGCTCTGCTCACGCTCACTGCGCAACAGACGG < 2:469465/150‑1 ACCCACGCGAGTTGCTGCGCCTTACCCGCTCGCTCAACCGTCTGTTGCGCAGTGAGCGTGAGCAGCGCACGCGCTACCGTGATTCGCTGGACGACCTGGCGCACAGCCTGAAGACGCCGCTGGCGGTGCTGCAGGGCGTGGGTGAAAGCTTGCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1362257‑1362413 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcagcaCCCGCGCCTGCTCGCGCTCGCCGCTGCGCTGCTGCAAGCTTTCACCCACGCCCTGCAGCACCGCCAGCGGCGTCTTCAGGCTGTGCGCCAGGTCGTCCAGCGAATCACGGTAGCGCGTGCGCTGCTCACGCTCACTGCGCAACAGACGG < NC_002947/1362442‑1362294 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |