New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2296850 =	39 (1.690)	4 (0.180)	4/242	NT	9.2%	coding (3315/3645 nt)	sbcC	exonuclease subunit SbcC
	?	NC_002947	2296904 =	41 (1.830)					coding (3261/3645 nt)	sbcC	exonuclease subunit SbcC

ATGAACAGCGACTCGATACGCAAGGTGCTGGACGCCATCGACGCCAGGCCCAGGGCCAGGGCCAGCGACACCAGGAAGGTTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTGGGCGATCTTGCGGAACACATCACCGGAGGCCGAACCGATCAGGGC  >  NC_002947/2296710‑2296999                                                                                                                                             |                                                                                                                                                      tcgaacaggcccaccagcagtggcaacgctgggcccgcctcaatgccctgatcggttcggcctccggtgatgtgttccgcaagatcgcccaaggctacaaccttgacctgctgctgcaccacgccaacgcccagctacgtCAGCAGGccc                                                                                                                                              <  1:310675‑M1/10‑1 (MQ=255)   gAACAGCGACTCGATACGCAAGGTGCTGGACGCCATCGACGCCAGGCCCAGGGCCAGGGCCAGCGACACCAGGAAGGTTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAg                                                                                                                                            >  1:575759/1‑150 (MQ=255)         cGACTCGATACGCAAGGTGCTGGGCGCCATCGACGCCAGGCCCAGGGCCAGGGCCAGCGACACCAGGAAGGTTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCt                                                                                                                                      <  1:437507/150‑1 (MQ=255)          gACTCGATACGCAAGGTGCTGGACGCCATCGACGCCAGGCCCAGGGCCAGGGCCAGCGACACCAGGAAGGTTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGCATTCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTg                                                                                                                                     >  1:315205/1‑150 (MQ=255)             tCGATACGCAAGGTGCTGGACGCCATCGACGCCAGGCCCAGGGCCAGGGCCAGCGACACCAGGAAGGTTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTgccg                                                                                                                                  >  1:345687/1‑150 (MQ=255)                   cGCAAGGTGCTGGACGCCACCGACGCCAGGCCCAGGGCCAGGGCCAGCGACACCAGGAAGGGTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCgcgc                                                                                                                            <  2:264461/150‑1 (MQ=255)                            cTGGACGCCATCGACGCCAGGCCCAGGGCCAGGGCCAGCGACACCAGGAAGGTTTCCGCGCGCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCgg                                                                                                                   <  2:225577/150‑1 (MQ=255)                              ggACGCCATCGACGCCAGGCCCAGGGCCAGGGCCAGCGACACCAGGAAGGTTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTa                                                                                                                 >  1:210455/1‑150 (MQ=255)                                  gCCATCGACGCCAGGCCCAGGGCCAGGGCCAGCGACACCAGGAAGGTTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGa                                                                                                             >  1:405068/1‑150 (MQ=255)                                      tCGACGCCAGGCCCAGGGCCAGGGCCAGCGCCACCAGGAAGGGTTCCCCGCGCGACCACGCGTGCACCGAACGCAGTTGCTCGCCCATCCCTGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGCGGCGGTAGCGACggg                                                                                                         >  2:481526/1‑150 (MQ=255)                                         caatgccctgatcggttcggcctccggtgatgtgttccgcaagatcgcccaaggctacaaccttgacctgctgctgcaccacgccaacgcccagctacgtCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCa                                                                                                      >  2:310675‑M1/101‑150 (MQ=255)                                               ggCCCAGGGCGAGGGCCAGCGACACCAGGGGGGGTGCCCCGCCGGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGCGCCCGTAGCGACGCGCCAGCTGAc                                                                                                <  1:481526/150‑1 (MQ=255)                                                gCCCAGGGCCAGGGCCAGCGACACCAGGAAGGTTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACg                                                                                               >  1:312918/1‑150 (MQ=255)                                                            ggccagCGACACCAGGAAGGTTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCGGGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGtt                                                                                   >  1:382481/1‑150 (MQ=255)                                                            ggccagCGACACCAGGAAGCTTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGtt                                                                                   <  2:405068/150‑1 (MQ=255)                                                             gccagCGACACCAGGAAGGTTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTg                                                                                  <  1:367321/150‑1 (MQ=255)                                                                  cGACACCAGGAAGGTTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCgtg                                                                             <  1:397811/150‑1 (MQ=255)                                                                  cGACACCAGGAAGGTTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCgtg                                                                             <  2:164744/150‑1 (MQ=255)                                                                           gAAGGTTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTgcagcag                                                                    >  1:516549/1‑150 (MQ=255)                                                                           gAAGGTTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTgcagcag                                                                    >  2:581040/1‑150 (MQ=255)                                                                                tttCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCt                                                                                                                                      >  1:46053/1‑79 (MQ=255)                                                                                tttCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCt                                                                                                                                      <  2:46053/79‑1 (MQ=255)                                                                                     tcgcccaaggctacaaccttgacctgctgctgcaccacgccaacgcccagctacgtCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACggg                                                                                                         >  2:349232‑M1/57‑103 (MQ=255)                                                                                     tcgcccaaggctacaaccttgacctgctgctgcaccacgccaacgcccagctacgtCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACggg                                                                                                         <  1:349232‑M1/47‑1 (MQ=255)                                                                                     ccgcccgACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGATGCGGTAGCGACGGTCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAgg                                                          <  1:274802/150‑1 (MQ=255)                                                                                     ccgcccgACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAgg                                                                >  1:484288/1‑144 (MQ=255)                                                                                     ccgcccgACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAgg                                                                <  2:484288/144‑1 (MQ=255)                                                                                     ccgcccgACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAgg                                                          >  1:240141/1‑150 (MQ=255)                                                                                      cgcccgACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGt                                                         >  2:360574/1‑150 (MQ=255)                                                                                       tccccACAACGAGAGCACCGAAGGGCGTTCGTCCTGATTATCCTTTTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGTAGCAGCAGGTCAAGGtt                                                        <  2:315205/149‑1 (MQ=255)                                                                                          cgACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTa                                                     >  2:259250/1‑150 (MQ=255)                                                                                            aCAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGc                                                   <  2:516549/150‑1 (MQ=255)                                                                                                 gAGGGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGCTTGTAGCCTTgg                                              <  1:84723/150‑1 (MQ=255)                                                                                                             cGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTGGGCGATCTTGCgg                                  <  1:581040/150‑1 (MQ=255)                                                                                                               cAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTGGGCGATCTTGCGGaa                                <  1:259250/150‑1 (MQ=255)                                                                                                                  ttCGTCGCCCATCTCGGTGCCCAGCACCAGCAGCCCGAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTGGGCGATCTTGCGGCacac                             >  2:171994/1‑150 (MQ=255)                                                                                                                    cgtcgCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTGGGCGATCTTGCGGAACACAt                           <  1:360574/150‑1 (MQ=255)                                                                                                                      tcgCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTGGGCGATCTTGCGGAACACATCa                         >  1:361392/1‑150 (MQ=255)                                                                                                                             tctcGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTGGGCGATCTTGCGGAACACATCACCGGAgg                  >  1:73678/1‑150 (MQ=255)                                                                                                                              ctcGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTGGGCGATCTTGCGGAACACATCACCGGAGGc                 <  2:312918/150‑1 (MQ=255)                                                                                                                                   tgtCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGGGCGGCAGCAGGTCAAGGTTGTAGCCTTGGGCGAGCGTGCGGACCACATCACCGGCGGCCGAAc            >  2:40089/1‑150 (MQ=255)                                                                                                                                     tCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTGGGCGATCTTGCGGAACACATCACCGGAGGcc                >  1:483420/1‑144 (MQ=255)                                                                                                                                     tCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTGGGCGATCTTGCGGAACACATCACCGGAGGcc                <  2:483420/144‑1 (MQ=255)                                                                                                                                        agcaccagcaGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTgg                                              >  2:229404/1‑111 (MQ=255)                                                                                                                                        agcaccagcaGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTgg                                              <  1:229404/111‑1 (MQ=255)                                                                                                                                        agcaccagcaGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTGGGCGATCTTGCGGAACACAt                           >  1:47266/1‑130 (MQ=255)                                                                                                                                        agcaccagcaGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTGGGCGATCTTGCGGAACACAt                           <  2:47266/130‑1 (MQ=255)                                                                                                                                         gcaccagcaGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTGGGCGATCTTGCGGAACACATCACCGGAGGCCGAACCGATCa      >  2:275978/1‑150 (MQ=255)                                                                                                                                         gcaccagcaGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTGGACCGGTGAGCTGGACACATCACCGGAGGCCGAACCGATCa      >  2:206433/1‑150 (MQ=255)                                                                                                                                             CAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTGGGCGATCTTGCGGAACACATCACCGGAGGCCGAACCGATCAGGGc  <  1:506861‑M1/150‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                      ATGAACAGCGACTCGATACGCAAGGTGCTGGACGCCATCGACGCCAGGCCCAGGGCCAGGGCCAGCGACACCAGGAAGGTTTCCCCGCCCGACAACGAGTGCACCGAACGCAGTTCGTCGCCCATCTCGGTGTCCAGCACCAGCAGGCCCAGGGCGCTGCCGCCGCGCTTGAGGCGGTAGCGACGGGCCAGCTGACGTAGCTGGGCGTTGGCGTGGTGCAGCAGCAGGTCAAGGTTGTAGCCTTGGGCGATCTTGCGGAACACATCACCGGAGGCCGAACCGATCAGGGC  >  NC_002947/2296710‑2296999

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.