New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2434132	37 (1.600)	7 (0.340)	7/224	NT	17.3%	intergenic (+32/+76)	uup/PP_2132	ABC transporter ATP‑binding protein/universal stress protein
	?	NC_002947	= 2434180	34 (1.640)					intergenic (+80/+28)	uup/PP_2132	ABC transporter ATP‑binding protein/universal stress protein

CTTCTATCAGCGGCCGATTGCAGAAACTTCGGCGGTGCTGGCGCGGATCGAGAAGCTGCAGGGCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACACGGCGCACCGTGCAGCACATCGTTGGCCGTGGA  >  NC_002947/2433992‑2434279                                                                                                                                             |                                                                                                                                                    cTTCTATCAGCGGCCGATTGCAGAAACTTCGGCGGTGCTGGCGCGGATCGAGAAGCTGCAGGGCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTcaaaaaga                                                                                                                                            >  2:222975/1‑145 (MQ=255)       tCAGCGGCCGATTGCAGAAACTTCGGCGGTGCTGGCGCGGATCGAGAAGCTGCAGGGCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGc                                                                                                                                      >  1:435300/1‑150 (MQ=255)           cGGCCGATTGCAGAAACTTCGGCGGTGCTGGCGCGGATCGAGAAGCTGCAGGGCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGccagcccgcgcctgcaagg                                                                                                                                  <  2:250301‑M1/150‑20 (MQ=255)                        aaaCTTCGGCGGTGCTGGCGCGGATCGAGAAGCTGCAGGGCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCAt                                                                                                                          <  1:493104/145‑1 (MQ=255)                        aaaCTTCGGCGGTGCTGGCGCGGATCGAGAAGCTGCAGGGCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCAt                                                                                                                          >  2:493104/1‑145 (MQ=255)                            ttCGGCGGTGCTGGCGCGGATCGAGAAGCTGCAGGGCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCa                                                                                                                 >  2:602505/1‑150 (MQ=255)                            ttCGGCGGTGCTGGCGCGGATCGAGAAGCTGCAGGGCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCa                                                                                                                 >  2:534234/1‑150 (MQ=255)                                         gcgcGGATCGAGAAGCTGCAGGGCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGAtt                                                                                                                               <  1:463885/123‑1 (MQ=255)                                         gcgcGGATCGAGAAGCTGCAGGGCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGAtt                                                                                                                               >  2:463885/1‑123 (MQ=255)                                           gcgGATCGAGAAGCTGCAGGGCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGccc                                                                                                  >  1:566074‑M2/1‑147 (MQ=255)                                                tCGAGAAGCTGCAGGGCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGcccgagaa                                                                                             <  2:322690‑M2/150‑9 (MQ=255)                                                   agaAGCTGCAGGGCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTaaa                                                                                                                                                 <  1:310151/95‑1 (MQ=255)                                                   agaAGCTGCAGGGCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTaaa                                                                                                                                                 >  2:310151/1‑95 (MQ=255)                                                       gCTGCAGGGCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGTCCCGCGAAGAGGCgg                                                                                      <  1:50300/150‑1 (MQ=255)                                                       gCTGCAGGGCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCgg                                                                                      <  2:610506/150‑1 (MQ=255)                                                       gCTGCAGGGCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCgg                                                                                      <  1:497784/150‑1 (MQ=255)                                                       gCTGCAGGGCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCgg                                                                                      >  1:134104/1‑150 (MQ=255)                                                         tGCAGGGCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCCGCCCCGGTTTTTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCgggg                                                                                    >  1:38448/1‑149 (MQ=255)                                                               gCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGt                                                                              <  2:330911/150‑1 (MQ=255)                                                               gCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGt                                                                              <  1:345574/150‑1 (MQ=255)                                                                    cTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGccagcccgcgcctgcaagggtatggcaatccctgcaggtgcggctttacccgcgaaga                                                                                           >  1:81783‑M1/1‑74 (MQ=255)                                                                    cTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGccagcccgcgcctgcaagggtatggcaatccctgcaggtgcggctttacccgcgaaga                                                                                           <  2:81783‑M1/132‑59 (MQ=255)                                                                    cTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCGGt                                                                         >  2:537730/1‑150 (MQ=255)                                                                        aTGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAAt                                                                     <  1:222975/150‑1 (MQ=255)                                                                             ttGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCCATCcttc                                                                >  2:403331/1‑150 (MQ=255)                                                                             ttGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCcttc                                                                <  1:534234/150‑1 (MQ=255)                                                                                  ggAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTGGTAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAg                                                           <  1:322690/150‑1 (MQ=255)                                                                                       gcTGGGCTGAGCTGGAGGGCGGAGTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGGTTGCCATAGCCGCGGAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGc                                                      <  2:125750/150‑1 (MQ=255)                                                                                            gCTGAGCTGGAAGGCTGATTAGCGTTAGCGTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGAGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTAcc                                                 <  1:28864/150‑1 (MQ=255)                                                                                                  cTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGccagcccgcgcctgcaagggtatggcaatccctgcaggtgcggctttacccgcgaagaggccg                                                                                      >  1:275886‑M1/1‑44 (MQ=255)                                                                                                  cTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGccagcccgcgcctgcaagggtatggcaatccctgcaggtgcggctttacccgcgaagaggccg                                                                                      <  2:275886‑M1/107‑64 (MQ=255)                                                                                                   tGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCa                                          >  2:392540/1‑150 (MQ=255)                                                                                                   tGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCa                                          >  2:221862/1‑150 (MQ=255)                                                                                                    ggAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGtaaagccgcgcctgcaagggtatggcaatccctgcaggtgcggc                                                                                                         <  1:428052‑M1/86‑45 (MQ=255)                                                                                                    ggAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGtaaagccgcgcctgcaagggtatggcaatccctgcaggtgcggc                                                                                                         >  2:428052‑M1/1‑42 (MQ=255)                                                                                                     gAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCa                                                            >  2:175677/1‑130 (MQ=255)                                                                                                     gAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCa                                                            <  1:175677/130‑1 (MQ=255)                                                                                                     gAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACg                                        <  1:166586/150‑1 (MQ=255)                                                                                                        ggCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTca                                     >  1:22620/1‑150 (MQ=255)                                                                                                            gATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACACTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACCCg                                 >  1:49073/1‑150 (MQ=255)                                                                                                              ttGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACACGgc                               >  2:274131/1‑150 (MQ=255)                                                                                                                         cTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACACGGCGCACCGTgcag                    >  2:132472/1‑150 (MQ=255)                                                                                                                         cTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACACGGCGCACCGTgcag                    <  1:221862/150‑1 (MQ=255)                                                                                                                               cGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGcccgcgaagaggccggaacaggctaacgccaatcagccttccag                                                         <  2:275886‑M2/107‑45 (MQ=255)                                                                                                                               cGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGcccgcgaagaggccggaacaggctaacgccaatcagccttccag                                                         >  1:275886‑M2/1‑63 (MQ=255)                                                                                                                                   ctctTCGCGGGTAAAGCCGCACCTGCGGCTAGTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACACGGCGCACCGTGCAGCACATCGTTg          >  1:325013/1‑150 (MQ=255)                                                                                                                                   ctctTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACACGGCGCACCGTGCAGCACATCGTTg          <  1:119735/150‑1 (MQ=255)                                                                                                                                    tctTCGCGGGTAAAGCCGCACGTGCGGGGATTGCCATACACTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACACGGCTCACCGTGCAGCTCATCGTTgg         <  2:38448/150‑1 (MQ=255)                                                                                                                                    tctTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGcccgcgaagaggccggaacaggctaacgccaatcagccttccagctcagcccagcgctccaccaatacatccag                           >  1:81783‑M2/1‑58 (MQ=255)                                                                                                                                    tctTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGcccgcgaagaggccggaacaggctaacgccaatcagccttccagctcagcccagcgctccaccaatacatccag                           <  2:81783‑M2/132‑75 (MQ=255)                                                                                                                                    tctTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACACGGCGCACCGTgc                      >  2:302731/1‑137 (MQ=255)                                                                                                                                    tctTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACACGGCGCACCGTgc                      <  1:302731/137‑1 (MQ=255)                                                                                                                                    tctTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACACGGCGCACCGTGCAGCACATCGTTgg         <  1:602505/150‑1 (MQ=255)                                                                                                                                      ttCTCGGGccagcccgcgcctgcaagggtatggcaatccctgcaggtgcggctttacccgcgaagaggccggaacaggctaacgccaatcagccttccagctcagcccagcgctccaccaatacatccagctcgccctgcagcttctcga       <  2:322690‑M1/150‑143 (MQ=255)                                                                                                                                         gcgGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACACGGCGCACCGTGCAGCACATCGTTGGCCGTg    >  1:338312/1‑150 (MQ=255)                                                                                                                                           gggccagcccgcgcctgcaagggtatggcaatccctgcaggtgcggctttacccgcgaagaggccggaacaggctaacgccaatcagccttccagctcagcccagcgctccaccaatacatccagctcgccctgcagcttctcgatccgc  >  1:566074‑M1/1‑3 (MQ=255)                                                                                                                                           gggTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCggg                                                                                     <  1:74531/67‑1 (MQ=255)                                                                                                                                           gggTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCggg                                                                                     >  2:74531/1‑67 (MQ=255)                                                                                                                                            ggTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCaa                                                                      >  2:450167/1‑81 (MQ=255)                                                                                                                                            ggTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCaa                                                                      <  1:450167/81‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                    CTTCTATCAGCGGCCGATTGCAGAAACTTCGGCGGTGCTGGCGCGGATCGAGAAGCTGCAGGGCGAGCTGGATGTATTGGTGGAGCGCTGGGCTGAGCTGGAAGGCTGATTGGCGTTAGCCTGTTCCGGCCTCTTCGCGGGTAAAGCCGCACCTGCAGGGATTGCCATACCCTTGCAGGCGCGGGCTGGCCCGCGAAGAGGCGGGTTCAGGTCCAGTCAATCCTTCTTCAGCAAGCGTACCGCCAGCACGTCACACGGCGCACCGTGCAGCACATCGTTGGCCGTGGA  >  NC_002947/2433992‑2434279

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.