New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2872929	19 (0.820)	3 (0.140)	3/236	NT	13.1%	coding (189/1164 nt)	PP_2525	hypothetical protein
	?	NC_002947	= 2872955	22 (1.010)					coding (163/1164 nt)	PP_2525	hypothetical protein

TGGCAGGCCGAGGGTGATGGCAAAACCGAGGTCTTCGGTGGCAAAGCCCAGGCGCAGGCGCCTGACTTCGCTCGGATGCTGGCCTTGGATGGGCACTTCGCCGCGCCGCATTCGTGCGCTGGTTTCTGGGCCAGCCCACCAGGTCGAATCCAGCCCGCCTTCACGGGCGAGGGCTTCGACCACACCGCCCTGTGCGGTTTCGGCCAGCAGGCGCAGCGCCTTGTACAGGTTGGATTTGCCGCTGCCGTTGGCACCGGTCACCAGGTTGAGTTGGCTCAGCGGCAGCACCAGGTGG  >  NC_002947/2872782‑2873076                                                                                                                                                    |                                                                                                                                                    tGGCAGGCCGAGGGTGATGGCAAAACCGAGGTCTTCGTTGGCAAAGCCCAGGCGCAGGCGCCTGACTTCGCTCGGATGCTGGCCTTGGATGGGCACTTCGCCGCGCCGCATTCGTGCGCTGGTTTCTGGGCCAGCCCACCAGGTCGAAgc                                                                                                                                                   >  2:488623‑M1/1‑148 (MQ=255)     aGGCCGAGGGTGATGGCAAAACCGAGGTCTTCGGTGGCAAAGCCCAGGCGCAGGCGCCTGACTTCGCTCGGATGCTGGCCTTGGATGGGCACTTCGCCGCGCCGCATTCGTGCGCTGGTTTCTGGGCCAGCCCACCAGGTCGAATCCAGc                                                                                                                                               >  2:578753/1‑150 (MQ=255)                                tCTTCGGTGGCAAAGCCCAGGCGCAGGCGCCGGACTTCGCTCGGATGCTGGCCTTGGATGGGCACTTCGCCGCGCCGCATTCGTGCGCTGGTTTCCGGGCCAGCCCACCAGGTCGAATCCAGCCCGCCTTCACGGGCGAGGGCttcgacc                                                                                                                    <  2:346517‑M2/150‑8 (MQ=255)                                        ggCAAAGCCCAGGCGCAGGCGCCTGACTTCGCTCGGATGCTGGCCTTGGATGGGCACTTCGCCGCGCCGCATTCGTGCGCTGGTTTCTGGGCCAGCCCACCAGGTCGAAgccctcgcccgtgaaggcgggctggattcgacctggtgggc                                                                                                            <  1:488623‑M1/150‑42 (MQ=255)                                           aaaGCCCAGGCGCAGGCGCCTGACTTCGCTCGGATGCTGGCCTTGGATGGGCACTTCGCCGCGCCGCATTCGTGCGCTGGTTTCTGGGCCAGCCCACCAGGTCGAATCCAGc                                                                                                                                               >  2:549266/1‑112 (MQ=255)                                           aaaGCCCAGGCGCAGGCGCCTGACTTCGCTCGGATGCTGGCCTTGGATGGGCACTTCGCCGCGCCGCATTCGTGCGCTGGTTTCTGGGCCAGCCCACCAGGTCGAATCCAGc                                                                                                                                               <  1:549266/112‑1 (MQ=255)                                            aaGCCCAGGCGCAGGCGCCTGACTTCGCTCGGATGCTGGCCTTGGATGGGCACTTCGCCGCGCCGCATTCGTGCGCTGGTTTCTGGGCCAGCCCACCAGGTCGAATCCAGCCCGCCTTCACGGGCGAGGGCTTCGACCACACCGCCCtgt                                                                                                        <  2:597918/150‑1 (MQ=255)                                            aaGCCCAGGCGCAGGCGCCTGACTTCGCTCGGATGCTGGCCTTGGATGGGCACTTCGCCGCGCCGCATTCGTGCGCTGGTTTCTGGGCCAGCCCACCAGGTCGAATCCAGCCCGCCTTCACGGGCGAGGGCTTCGACCACACCGCCCtgt                                                                                                        >  1:597918/1‑150 (MQ=255)                                               gtcaggcgcctgcgCCTGACTTCGCTCGGATGCTGGCCTTGGATGGGCACTTCGCCGCGCCGCATTCGTGCGCTGGTTTCTGGGCCAGCCCACCAGGTCGAATCCAGCCCGCCTTCACGGGCGAGGGCTTCGACCACACCGCCCTGTGCg                                                                                                     <  1:101996/148‑1 (MQ=255)                                                          gcgcCTGACTTCGCTCGGATGCTGGCCTTGGATGGGCACTTCGCCGCGCCGCATTCGTGCGCTGGTTTCTGGGCCAGCCCACCAGGTCGAATCCAGCCCGCCTTCACGGGCGAGGGCTTCGACCACACCGCCCTGTGCGGTTTCGGCcag                                                                                          >  1:94798/1‑150 (MQ=255)                                                             ccTGACTTCGCTCGGATGCTGGCCTTGGATGGGCACTTCGCCGCGCCGCATTCGTGCGCTGGTTTCTGGGCCAGCCCACCAGGTCGAATCCAGCCCGCCTTCACGGGCGAGGGCTTCGACCACACCGCCCTGTGCGGTTTCGGCcagcag                                                                                       >  2:348492/1‑150 (MQ=255)                                                                gACTTCGCTCGGATGCTGGCCTTGGATGGGCACTTCGCCGCGCCGCATTCGTGCGCTGGTTTCTGGGCCAGCCCACCAGGTCGAATCCAGCCCGCCTTCACGGGCGAGGGCTTCGACCACACCGCCCTGTGCGGTTTCGGCCAGCAGgcg                                                                                    >  2:430653/1‑150 (MQ=255)                                                                        tCGGATGCTGGCCTTGGATGGGCACTTCGCCGCGCCGCATTCGTGCGCTGGTTTCTGGGCCAGCCCACCAGGTCGAATCCAGCCCGCCTTCACGGGCGAGGGCTTCGACCACACCGCCCTGTGCGGTTTCGGCCAGCAGGCGCAGCGCCt                                                                            >  2:510743/1‑150 (MQ=255)                                                                                tGGCCTTGGATGGGCACTTCGCCGCGCCGCATTCGTGCGCTGGTTTCTGGGCCAGCCCACCAGGTCGAAgccctcgcccgtgaaggcgggctggattcga                                                                                                                      >  2:264059‑M1/1‑69 (MQ=255)                                                                                tGGCCTTGGATGGGCACTTCGCCGCGCCGCATTCGTGCGCTGGTTTCTGGGCCAGCCCACCAGGTCGAAgccctcgcccgtgaaggcgggctggattcga                                                                                                                      <  1:264059‑M1/100‑32 (MQ=255)                                                                                  gCCTTGGATGGGCACTTCGCCGCGCCGCATTCGTGCGCTGGTTTCTGGGCCAGCCCACCAGGTCGAATCCAGCCCGCCTTCACGGGCGAGGGCTTCGACCACACCGCCCTGTGCGGTTTCGGCCAGCAGGCGCAGCGCCTTGTACAGGtt                                                                  <  1:207527/150‑1 (MQ=255)                                                                                  gCCTTGGATGGGCACTTCGCCGCGCCGCATTCGTGCGCTGGTTTCCGGGCCAGCCCACCAGGTCGAATCCAGCCCGCCTTCACGGGCGAGGGCTTCGACCACACCGCCCTGTGCGGTTTCGGCCAGCAGGCGCAGCGCCTTGTACAGGtt                                                                  <  1:346517/150‑1 (MQ=255)                                                                                    cTTGGATGGGCACTTCGCCGCGCCGCATTCGTGCGCTGGTTTCTGGGCCAGCCCACCAGGTCGAATCCAGCCCGCCTTCACGGGCGAGGGCTTCGACCACACCGCCCTGTGCGGTTTCGGCCAGCAGgc                                                                                     <  1:386662/129‑1 (MQ=255)                                                                                    cTTGGATGGGCACTTCGCCGCGCCGCATTCGTGCGCTGGTTTCTGGGCCAGCCCACCAGGTCGAATCCAGCCCGCCTTCACGGGCGAGGGCTTCGACCACACCGCCCTGTGCGGTTTCGGCCAGCAGgc                                                                                     >  2:386662/1‑129 (MQ=255)                                                                                             gCACTTCGCCGCGCCGCATTCGTGCGCTGGTTTCTGGGCCAGCCCACCAGGTCGAATCCAGCCCGCCTTCACGGGCGAGGGCTTCGACCACACCGCCCTGTGCGGTTTCGGCCAGCAGGCGCAGCGCCTTGTACAGGTTGGATTTGCCGc                                                       >  2:30677/1‑150 (MQ=255)                                                                                                cTTCGCCGCGCCGCATTCGTGCGCTGGTTTCTGGGCCAGCCCACCAGGTCGAATCCAGCCCGCCTTCACGGGCGAGGGCTTCGACCACACCGCCCTGTGCGGTTTCGGCCAGCAGGCGCAGCGCCTTGTACAGGTTGGATTTGCCGCTGc                                                    >  1:51578/1‑150 (MQ=255)                                                                                                                             tCTGGGCCAGCCCACCAGGTCGAATCCAGCCCGCCTTCACGGGCGAGGGCTTCGACCACACCGCCCTGTGCGGTTTCGGCCAGCAGGCGCAGCGCCTTGTACAGGTTGGATTTGCCGCTGCCGTTGGCACCGGTCACCAGGTTGAGTTgg                       <  1:249541/150‑1 (MQ=255)                                                                                                                                      gCCCACCAGGTCGAATCCAGCCCGCCTTCACGGGCGAGGGCttcgacctggtgggctggcccagaaaccagcgcacgaatgcggcgcggcgaagtgcccatccaaggccagcatccgagcgaagtcaggcgcctgcgcctgggctttgcc              <  1:488623‑M2/150‑110 (MQ=255)                                                                                                                                          accaGGTCGAATCGAGCCCGCCTTCACGGGCGAGGGCTTCGACCACACCGCCCTGTGCGGTTTCGGCCAGCAGGCGCAGCGCCTTGTACAGGTTGGATTTGGCGTTGCCGTTGGCACCGGTCACCAGGTTGAGTTGGCTCAGCGgcagca          >  2:479071/1‑150 (MQ=255)                                                                                                                                              ggTCGAAgccctcgcccgtgaaggcgggctggattcgacctggtgggctggcccggaaaccagcgcacgaatgcggcgcggcgaagtgcccatccaaggccagcatccgagcgaagtccggcgcctgcgcctgggctttgccaccgaaga      <  2:346517‑M1/150‑144 (MQ=255)                                                                                                                                              ggTCGAATCCAGCCCGCCTTCACGGGCGAGGGCTTCGACCACACCGCCCTGTGCGGTTTCGGCCAGCAGGCGCAGCGCCTTGTACAGGTTGGGTTTGCCGCTGCCGTTGGCACCGGTCGCAAGTGTTAGTTGGCTCAGCGGCAGCACCAg      >  1:157037/1‑150 (MQ=255)                                                                                                                                                tCGAATCCAGCCCGCCTTCACGGGCGAGGGCttcgacctggtgggctggcccagaaaccagcgcacgaatgcggcgcggcgaagtgcccatccaaggcca                                                      >  2:264059‑M2/1‑31 (MQ=255)                                                                                                                                                tCGAATCCAGCCCGCCTTCACGGGCGAGGGCttcgacctggtgggctggcccagaaaccagcgcacgaatgcggcgcggcgaagtgcccatccaaggcca                                                      <  1:264059‑M2/100‑70 (MQ=255)                                                                                                                                                  gAATCCAGCCCGCCTTCACGGGCGAGGGCTTCGACCACACCGCCCTGTGCGGTTTCGGCCAGCAGGCGCAGCGCCTTGTACAGGTTGGATTTGCCGCTGCCGTTGGCACCGGTCACCAGGTTGAGTTGGCTCAGCGGCAGCACCAggtgg  <  2:71920/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    TGGCAGGCCGAGGGTGATGGCAAAACCGAGGTCTTCGGTGGCAAAGCCCAGGCGCAGGCGCCTGACTTCGCTCGGATGCTGGCCTTGGATGGGCACTTCGCCGCGCCGCATTCGTGCGCTGGTTTCTGGGCCAGCCCACCAGGTCGAATCCAGCCCGCCTTCACGGGCGAGGGCTTCGACCACACCGCCCTGTGCGGTTTCGGCCAGCAGGCGCAGCGCCTTGTACAGGTTGGATTTGCCGCTGCCGTTGGCACCGGTCACCAGGTTGAGTTGGCTCAGCGGCAGCACCAGGTGG  >  NC_002947/2872782‑2873076

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.