New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3368837 =	15 (0.650)	5 (0.230)	5/240	NT	24.8%	coding (2100/3015 nt)	PP_2964	transposase
	?	NC_002947	3368872 =	16 (0.720)					coding (2135/3015 nt)	PP_2964	transposase

CGTCACCTCTCGCTGGAAAAACTGGACAAGGCTAACCGCGAGTTGGTGGAACTCTACCTTCAACTTGATCTGCCCAAGCTCTGGGGCGATGGCAAGGCGGTGGCTGCGGACGGCACGCAGTTCGACTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAGGGGCTGCTCAAGGCTGATCTCAGCGT  >  NC_002947/3368688‑3368986                                                                                                                                                      |                                                                                                                                                      cccttgggtatcggagtacaccgtgtcagcctcgacgctgagatcagccttgagcagcccctcgatcacgtagatcgcataccagatgcccggcgggatgaagagctggaacacggcgatgtagttgttggccacgtgccgataggccac                                                                                                                                                       >  1:600910‑M1/150‑150 (MQ=255)  ccttgggtatcggagtacaccgtgtcagcctcgacgctgagatcagccttgagcagcccctcgatcacgtagatcgcctcccagatgcccggcgggatgaagtgctggaacacggcgatgtagttgttggccacgtgccgataggccaCg                                                                                                                                                      <  1:127323‑M1/2‑1 (MQ=255)   cttgggtatcggagtacaccgtgtcagcctcgacgctgagatcagccttgagcagcccctcgatcacgtagatcgcctcccagatgcccggcgggatgaagtgctggaacacggcgatgtagttgttggccacgtgccgataggccaCgg                                                                                                                                                     >  2:277123‑M1/148‑150 (MQ=255)    ttgggtatcggagtacaccgtgtcagcctcgacgctgagatcagccttgagcagcccctcgatcacgtagatcgcctcccagatgcccggcgggatgaagtgctggaacacggcgatgtagttgttggccacgtgccgataggccaCGGc                                                                                                                                                    <  1:591755‑M1/4‑1 (MQ=255)         tatcggagtacaccgtgtcagcctcgacgctgagatcagccttgagcagcccctcgatcacgtagatcgcctcccagatgcccggcgggatgaagtgctggaacacggcgatgtagttgttggccacgtgccgataggccaCGGCTACCa                                                                                                                                               <  1:90455‑M1/9‑1 (MQ=255)                  aaaaCTGGACAAGGCTAACCGCGAGTTGGTGGAACTCTACCTTCAACTTGATCTGCCCAAGCTCTGGGGCGATGGCAAGGCGGTGGCTGCGGACGGCACGCAGTGCGACTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTa                                                                                                                                      >  2:591755/1‑150 (MQ=255)                          tcagcctcgacgctgagatcagccttgagcagcccctcgatcacgtagatcgcctcccagatgcccggcgggatgaagtgctggaacacggcgatgtagttgttggccacgtgccgataggccac                                                                                                                                                       >  2:271330‑M1/125‑125 (MQ=255)                          tcagcctcgacgctgagatcagccttgagcagcccctcgatcacgtagatcgcctcccagatgcccggcgggatgaagtgctggaacacggcgatgtagttgttggccacgtgccgataggccac                                                                                                                                                       <  1:271330‑M1/1‑1 (MQ=255)                                   aCCGCGAGTTGGTGGAACTCTACCTTCAACTTGATCTGCCCAAGCTCTGGGGCGATGGCAAGGCGGTGGCTGCGGACGGCACGCAGTTCGACTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCg                                                                                                                     <  1:184688/150‑1 (MQ=255)                                    ccGCGAGTTGGTGGAACTCTACCTTCAACTTGATCTGCCCAAGCTCTGGGGCGATGGCAAGGCGGTGGCTGCGGACGGCACGCAGTTCGACTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGt                                                                                                                    <  1:235923/150‑1 (MQ=255)                                      ctgagatcagccttgagcagcccctcgatcacgtagatcgcctcccagatgcccggcgggatgaagtgctggaacacggcgatgtagttgttggccacgtgccgataggccaCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTgg                                                                                                                  >  2:90455‑M1/113‑150 (MQ=255)                                                      gcagcccctcgatcacgtagatcgcctcccagatgcccggcgggatgaagtgctggaacacggcgatgtagttgttggccacgtgccgataggccaCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTg                                                                                                                   <  1:187827‑M1/37‑1 (MQ=255)                                                      gcagcccctcgatcacgtagatcgcctcccagatgcccggcgggatgaagtgctggaacacggcgatgtagttgttggccacgtgccgataggccaCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTg                                                                                                                   >  2:187827‑M1/97‑133 (MQ=255)                                                      ctACCTTCAACTTGATCTGCCCAAGCTCTGGGGCGATGGCAAGGCGGTGGCTGCGGACGGCACGCAGTTCGACTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGc                                                                                                  >  1:273342/1‑150 (MQ=255)                                                                cTTGATCTGCCCAAGCTCTGGGGCGATGGCAAGGCGGTGGCTGCGGACGGCACGCAGTTCGACTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTAc                                                                                        >  2:238544/1‑150 (MQ=255)                                                                           cAAGCTCTGGGGCGATGGCAAGGCGGTGGCTGCGGACGGCACGCAGTTCGACTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGtt                                                                             >  1:549118/1‑150 (MQ=255)                                                                           cAAGCTCTGGGGCGATGGCAAGGCGGTGGCTGCGGACGGCACGCAGTTCGAATACTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGtt                                                                             >  2:69663/1‑150 (MQ=255)                                                                              cctcccagatgcccggcgggatgaagtgctggaacacggcgatgtagttgttggccacgtgccgataggccaCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGt                                                                                                                    >  1:410879‑M1/73‑108 (MQ=255)                                                                              cctcccagatgcccggcgggatgaagtgctggaacacggcgatgtagttgttggccacgtgccgataggccaCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGt                                                                                                                    <  2:410879‑M1/36‑1 (MQ=255)                                                                                  tGGGGCGATGGCAAGGCGGTGGCTGCGGACGGCACGCAGTTCGACTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCAc                                                                      >  1:233963/1‑150 (MQ=255)                                                                                                         tGCGGACGGCACGCAGTTCGACTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGa                                               >  2:127323/1‑150 (MQ=255)                                                                                                                             aCTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATc                                                                <  2:17778/113‑1 (MQ=255)                                                                                                                             aCTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATc                                                                >  1:17778/1‑113 (MQ=255)                                                                                                                              cTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAggg                          <  1:238544/150‑1 (MQ=255)                                                                                                                               ttCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAgggg                         <  2:233963/150‑1 (MQ=255)                                                                                                                                  tATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAGGGgctg                      <  2:273342/150‑1 (MQ=255)                                                                                                                                        gccAACCTGCTGGCCGGCTACCACTCTCGCTCCCGCAAAATGGGAGCCGTGGCCTATCGGCACCTGGCCAAGAACTACATCGCCGTGTTCCCGCACTTCATCCCGCCAGGCATCTGGGACGCGACCTACGTGATCCAGGGGCCGCTCAAg                >  2:47599/3‑150 (MQ=255)                                                                                                                                                      CGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAGGGGCTGCTCAAGGCTGATCTCAGCGt  <  1:263009‑M1/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                      CGTCACCTCTCGCTGGAAAAACTGGACAAGGCTAACCGCGAGTTGGTGGAACTCTACCTTCAACTTGATCTGCCCAAGCTCTGGGGCGATGGCAAGGCGGTGGCTGCGGACGGCACGCAGTTCGACTTCTATGATGACAACCTGCTGGCCGGCTACCACTTTCGCTACCGCAAAATGGGAGCCGTGGCCTATCGGCACGTGGCCAACAACTACATCGCCGTGTTCCAGCACTTCATCCCGCCGGGCATCTGGGAGGCGATCTACGTGATCGAGGGGCTGCTCAAGGCTGATCTCAGCGT  >  NC_002947/3368688‑3368986

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.