New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4772452 =	27 (1.170)	3 (0.140)	3/236	NT	12.4%	coding (6860/10413 nt)	pvdD	non‑ribosomal peptide synthetase
	?	NC_002947	4772493 =	17 (0.780)					coding (6819/10413 nt)	pvdD	non‑ribosomal peptide synthetase

TCGAGCGTCTGCCCCGAATAACAGGCCAGGACTTCGCCCATCAACTGCGACGTACTCCAGCCATCGAGCAAGATATGGTGGTAGGTCCAGATCAGTTGATGGCGCTGATCGTCCAGGCGCACCAGCAGCATGCGCTGCAGCGGCGGCCTGGCCAGGTCGAAGCCGCGTTCACGCTCTTCGTTGGCCAGTGCCTCCAGCGCCTGCGCGCAATCGCCACGACCGCGCCAGTCCAGCTCACGCAATGGCAGTGGCAACTGCCCCATCACGTACTGCAATGGCTCATCCAGGTCT  >  NC_002947/4772305‑4772595                                                                                                                                                    |                                                                                                                                                tCGAGCGTCTGCCCCGAATAACAGGCCAGGACTTCGCCCATCAACTGCGACGTACTCCAGCCATCGAGCAAGATATGGTGGTAGGTCCAGATCAGTTGATGGCGCTGATCGTCCAGGCGCACCAGCAGCATGCGCTGCAGCGGCGGCCTg                                                                                                                                               <  1:362492/150‑1 (MQ=255)  tggtggcgcgccacgacgtattgcgcaccggcttcctttggcaagacctggatgagccattgcagtacgtgatggggcagttgccactgccattgcgtgagctggactggcgcggtcgtggcgattgcgcgcaggcgctggaggcaCTgg                                                                                                                                              >  2:350947‑M1/147‑150 (MQ=255)    gtggcgcgccacgacgtattgcgcaccggcttcctttggcaagacctggatgagccattgcagtacgtgatggggcagttgccactgccattgcgtgagctggactggcgcggtcgtggcgattgcgcgcaggcgctggaggcaCTGGcc                                                                                                                                            <  1:395500‑M1/6‑1 (MQ=255)             cccGAATAACAGGCCAGGACTTCGCCCATCAACTGCGACGTACTCCAGCCATCGAGCAAGATATGGTGGTAGGTCCAGATCAGTTGATGGCGCTGATCGTCCAGGCGCACCAGCAGCATGCGCTGCAGCGGCGGCCTGGCCAGGTCGAAg                                                                                                                                   >  1:269788/1‑150 (MQ=255)                       aGGCCAGGACTTCGCCCATCAACTGCGACGTACTCCAGCCATCGAGCAAGATATGGTGGTAGGTCCAGATCAGTTGATGGCGCTGATCGTCCAGGCGCACCAGCAGCATGCGCTGCAGCGGCGGCCTGGCCAGGTCGAAGCCGCGTTCAc                                                                                                                         >  1:490055/1‑150 (MQ=255)                          ccAGGACTTCGCCCATCAACTGCGACGTACTCCAGCCATCGAGCAAGATATGGTGGTAGGTCCAGATCAGTTGATGGCGCTGATCGTCCAGGCGCACCAGCAGCATGCGCTGCAGCGGCGGCCTGGCCAGGTCGAAGCCGCGTTCACGct                                                                                                                      <  2:307082/150‑1 (MQ=255)                           cAGGACTTCGCCCATCAACTGCGACGTACTCCAGCCATCGAGCAAGATATGGTGGTAGGTCCAGATCAGTTGATGGCGCTGATCGTCCAGGCGCACCAGCAGCATGCGCTGCAGCGGCGGCCTGGCCAGGTCGAAGCCGCGTTCACGctc                                                                                                                     >  1:126999/1‑150 (MQ=255)                             ggACTTCGCCCATCAACTGCGACGTACTCCAGCCATCGAGCAAGATATGGTGGTAGGTCCAGATCAGTTGATGGCGCTGATCGTCCAGGCGCACCAGCAGCATGCGCTGCAGCGGCGGCCTGGCCAGGTCGAAGCCGCGTTCACGCTCtt                                                                                                                   >  1:506844/1‑150 (MQ=255)                              gACTTCGCCCAGCAATTGCGACGTACTCCAGCTATCGAGAAAGATATGGTGGTAGGTCCAGATCAGTTGATGGCGCTGGTCGTCCAGGCTCACCAGCAGCTTTCTCTGCAGCGGCTGCCTGGCCAGGTAGAAGCCTCGTTCGCGCTCTTc                                                                                                                  <  2:275882/150‑1 (MQ=255)                                cTTCGCCCATCAACTGCGACGTACTCCAGCCATCGAGCAAGATATGGTGGTAGGTCCAGATCAGTTGATGGCGCTGATCGTCCAGGCGCACCAGCAGCATGCGCTGCAGCGGCGGCCTGGCCAGGTCGAAGCCGCGTTCACGCTCTTCGt                                                                                                                <  2:307493/150‑1 (MQ=255)                                 ttCGCCCATCAACTGCGACGTACTCCAGCCATCGAGCAAGATATGGTGGTAGGTCCAGATCAGTTGATGGCGCTGATCGTCCAGGCGCACCAGCAGCATGCGCTGCAGCGGCGGCCTGGCCAGGTCGAAGCCGCGTTCACGCTCTTCGtt                                                                                                               <  2:126999/150‑1 (MQ=255)                                      ccATCAACTGCGACGTACTCCAGCCATCGAGCAAGATATGGTGGTAGGTCCAGATCAGTTGATGGCGCTGATCGTCCAGGCGCACCAGCAGCATGCGCTGCAGCGGCGGCCTGGCCAGGTCGAAGCCGCGTTCACGc                                                                                                                       >  2:459946/1‑137 (MQ=255)                                      ccATCAACTGCGACGTACTCCAGCCATCGAGCAAGATATGGTGGTAGGTCCAGATCAGTTGATGGCGCTGATCGTCCAGGCGCACCAGCAGCATGCGCTGCAGCGGCGGCCTGGCCAGGTCGAAGCCGCGTTCACGc                                                                                                                       <  1:459946/137‑1 (MQ=255)                                          gcaagacctggatgagccattgcagtacgtgatggggcagttgccactgccattgcgtgagctggactggcgcggtcgtggcgattgcgcgcaggcgctggaggcaCTGGCCAGGTCGAAGCCGCGTTCACGCTCTTCGTTGGCCAGTGc                                                                                                      >  2:578999‑M1/107‑150 (MQ=255)                                                 gACGTACTCCAGCCATCGAGCAAGATATGGTGGTAGGTCCAGATCAGTTGATGGCGCTGATCGTCCAGGCGCACCAGCAGCATGCGCTGCAGCGGCGGCCTGGCCAGGTCGAAGCCGCGTTCACGCTCTTCGTTGGCCAGTGCCTCCAgc                                                                                               <  1:7503/150‑1 (MQ=255)                                                       cTCCAGCCATCGAGCAAGATATGGTGGTAGGTCCAGATCAGTTGATGGCGCTGATCGTCCAGGCGCACCAGCAGCATGCGCTGCAGCGGCGGCCTGGCCAGGTCGAAGCCGCGTTCACGCTCTTCGTTACCCACTGCCTCCAGCGCCTgc                                                                                         >  2:573723/1‑150 (MQ=255)                                                               aTCGAGCAAGATATGGTGGTAGGTCCAGATCAGTTGATGGCGCTGATCTTCCAGGCGCACCAGCAGCATGCGCTGCAGCGGCGGCCTGGCCAGGTCGACGCCTCGGTCACGCTCTTCGTTGGCCAGTGCCTCCAGCGCCTGCGCGCAATc                                                                                 <  1:573723/150‑1 (MQ=255)                                                               aTCGAGCAAGATATGGTGGTAGGTCCAGATCAGTTGATGGCGCTGATCGTCCAGGCGCACCAGCAGCATGCGCTGCAGCGGCGGCCTGGCCAGGTCGAAGCCGCGTTCACGCTCTTCGTTGGCCAGTGCCTCCAGCGCCTgcgcacactc                                                                                 <  1:614543/150‑7 (MQ=255)                                                               aTCGAGCAAGATATGGTGGTAGGTCCAGATCAGTTGATGGCGCTGATCGTCCAGGCGCACCAGCAGCATGCGCTGCAGCGGCGGCCTGGCCAGGTCGAAGCCGCGTTCACGCTCTTCGTTGGCCAGTGCCTCCAGCGCCTGCGCGCAATc                                                                                 >  2:598295/1‑150 (MQ=255)                                                                  gtacgtgatggggcagttgccactgccattgcgtgagctggactggcgcggtcgtggcgattgcgcgcaggcgctggaggcaCTGGCCAGGTCGAAGCCGCGTTCACGCTCTTCGTTgg                                                                                                             >  2:182070‑M1/83‑119 (MQ=255)                                                                  gtacgtgatggggcagttgccactgccattgcgtgagctggactggcgcggtcgtggcgattgcgcgcaggcgctggaggcaCTGGCCAGGTCGAAGCCGCGTTCACGCTCTTCGTTgg                                                                                                             <  1:182070‑M1/37‑1 (MQ=255)                                                                  gAGCAAGATATGGTGGTAGGTCCAGATCAGTTGATGGCGCTGATCGTCCAGGCGCACCAGCAGCATGCGCTGCAGCGGCGGCCTGGCCAGGTCGAAGCCGCGTTCACGCTCTTCGTTGGCCAGTGCCTCCAGCGCCTGCGCGCAATCGcc                                                                              <  2:490055/150‑1 (MQ=255)                                                                            tggtggTAGGTCCAGATCAGTTGATGGCGCTGATCGTCCAGGCGCACCAGCAGCATGCGCTGCAGCGGCGGCCTGGCCAGGTCGAAGCCGCGTTCACGCTCTTCGTTGGCCAGTGCCTCCAGCGCCTGCGCGCAATCGCCACGACCgcgc                                                                    <  1:598295/150‑1 (MQ=255)                                                                                ggtAGGTCCAGATCAGTTGATGGCGCTGATCGTCCAGGCGCACCAGCAGCATGCGCTGCAGCGGCGGCCTGGCCAGGTCGAAGCCGCGTTCACGCTCTTCGTTGGCCAGTGCCTCCAGCGCCTGCGCGCAATCGCCACGACCGCGCCAGt                                                                >  1:26013/1‑150 (MQ=255)                                                                                 gttgccactgccattgcgtgagctggactggcgcggtcgtggcgattgcgcgcaggcgctggaggcaCTg                                                                                                                                               <  1:279431‑M1/3‑1 (MQ=255)                                                                                 gttgccactgccattgcgtgagctggactggcgcggtcgtggcgattgcgcgcaggcgctggaggcaCTg                                                                                                                                               >  2:279431‑M1/68‑70 (MQ=255)                                                                                        cAGATCAGTTGATGGCGCTGATCGTCCAGGCGCACCAGCAGCATGCGCTGCAGCGGCGGCCTGGCCAGGTCGAAGCCGCGTTCACGCTCTTCGTTGGCCGGTGCCTCCAGCGCCTGCGCGCAATCGCCACGACCGCGCCAGTCCAGCTCa                                                        >  1:573478/1‑150 (MQ=255)                                                                                                    tGGCGCTGATCGTCCAGGCGCACCAGCAGCATGCGCTGCAGCGGCGGCCTGGCCAg                                                                                                                                          >  1:497131/1‑56 (MQ=255)                                                                                                    tGGCGCTGATCGTCCAGGCGCACCAGCAGCATGCGCTGCAGCGGCGGCCTGGCCAg                                                                                                                                          <  2:497131/56‑1 (MQ=255)                                                                                                             tCGTCCAGGCGCACCAGCAGCATGCGCTGCAGCGGCGGCCTGGCCAGGTCGAAGCCGCGTTCACGCTCTTCGTTGGCCAGTGCCTCCAGCGCCTGCGCGCAATCGCCACGACCGCGCCAGTCCAGCTCACGCAATGGCAGTGGCAACTGc                                   <  2:96283/150‑1 (MQ=255)                                                                                                                         aCCAGCAGCATGCGCTGCAGCGGCGGCCTGGCCAGGTCGAAGCCGCGTTCACGCTCTTCGTTGGCCAGTGCCTCCAGCGCCTGCGCGCAATCGCCACGACCGCGCCAGTCCAGCTCACGCAATGGCAGTGGCAAc                                      <  1:259324/135‑1 (MQ=255)                                                                                                                         aCCAGCAGCATGCGCTGCAGCGGCGGCCTGGCCAGGTCGAAGCCGCGTTCACGCTCTTCGTTGGCCAGTGCCTCCAGCGCCTGCGCGCAATCGCCACGACCGCGCCAGTCCAGCTCACGCAATGGCAGTGGCAAc                                      >  2:259324/1‑135 (MQ=255)                                                                                                                              cagcaTGCGCTGCAGCGGCGGCCTGGCCAGGTCGAAGCCGCGTTCACGCTCTTCGTTGGCCAGTGCCTCCAGCGCCTGCGCGCAATCGCCACGACCGCGCCAGTCCAGCTCACGCAATGGCAGTGGCAACTGCCCCATCACGTACTGCaa                  >  1:108947/1‑150 (MQ=255)                                                                                                                                gcgcatgcTGCAGCGGCGGCCTGGCCAGGTCGAAGCCGCGTTCACGCTCTTCGTTGGCCAGTGCCTCCAGCGCCTGCGCGCAATCGCCACGACCGCGCCAGTCCAGCTCACGCAATGGCAGTGGCAACTGCCCCATCACGTACTGCAATg                >  2:522933/7‑150 (MQ=255)                                                                                                                                              ggcggcCTGGCCAGGTCGAAGCCGCGTTCACGCTCTTCGTTGGCCAGTGCCTCCAGCGCCTGCGCGCAATCGCCACGACCGCGCCAGTCCAGCTCACGCAATGGCAGTGGCAACTGCCCCATCACGCCCTGCACTGGCTCATCCAGGTCt  <  2:26013/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                TCGAGCGTCTGCCCCGAATAACAGGCCAGGACTTCGCCCATCAACTGCGACGTACTCCAGCCATCGAGCAAGATATGGTGGTAGGTCCAGATCAGTTGATGGCGCTGATCGTCCAGGCGCACCAGCAGCATGCGCTGCAGCGGCGGCCTGGCCAGGTCGAAGCCGCGTTCACGCTCTTCGTTGGCCAGTGCCTCCAGCGCCTGCGCGCAATCGCCACGACCGCGCCAGTCCAGCTCACGCAATGGCAGTGGCAACTGCCCCATCACGTACTGCAATGGCTCATCCAGGTCT  >  NC_002947/4772305‑4772595

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.