| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5542790 | 9 (0.390) | 4 (0.180) | 4/234 | NT | 32.8% | intergenic (‑44/+70) | dnaB/rplI | replicative DNA helicase/50S ribosomal protein L9 |
| ? | NC_002947 | = 5542806 | 8 (0.370) | intergenic (‑60/+54) | dnaB/rplI | replicative DNA helicase/50S ribosomal protein L9 | |||||
TCAGGCCACCGAGCACGGCCTGTTCGGCCTCGATGGAATGCGGCGGTACCTTCAGGGCTGCGGTTTGCAGGTCAAGCTGTTCGGAGGTGGTGATCTCGTTCATGGCCACGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGG‑CCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGACGACCACGCGTACGGTGGCTTCAACGTCGCTGTGCAGGTGCACGGCTACGTCGTATTCGCCAAC > NC_002947/5542644‑5542937 | tCAGGCCACCGAGCACGGCCTGTTCGGCCTCGATGGAATGCGGCGGTACCTTCAGGGCTGCGGTTTGCAGGTCAAGCTGTTCGGAGGTGGTGATCTCGTTCATGGCCACGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGG‑CCt > 2:48584/1‑150 (MQ=255) cGGCCTGTTCGGCCTCGATGGAATGCGGCGGTACCTTCAGGGCTGCGGTTTGCAGGTCAAGCTGTTCGGAGGTGGTGATCTCGTTCATGGCCACGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGG‑CCTGTCGAAAACAGGAcc > 2:335334‑M2/1‑148 (MQ=255) gCCTGTTCGTCCTCGATGGAATGCGGCGGTACCTTCAGGGCTGCGGTTTGCAGGTCAAGCTGTTCGGAGGTGGTGATCTCGTTCATGGCCACGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGGtcctgttttcgacaggccgt < 1:252499‑M1/150‑21 (MQ=255) cTTCAGGGCTGCGGTTTGCAGGTCAAGCTGTTCGGAGGTGGTGATCTCGTTCATGGCCACGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGGTCCTGTTTTCGACAGGcgtgccctttgtctttttcatcctccagaattctt > 2:338146‑M2/1‑115 (MQ=255) cTGTTCGGAGGTGGTGATCTCGTTCATGGCCACGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGG‑CCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCt < 2:127612/150‑1 (MQ=255) cGGAGGTGGTGATCTCGTTCATGGCCACGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGG‑CCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTacgac < 1:264998/150‑1 (MQ=255) tggttATCTCGTTCATGGCCACGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGGtcctgttttcgacaggccgtgcc < 1:319709‑M1/83‑24 (MQ=255) tggtgATCTCGTTCATGGCCACGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGGtcctgttttcgacaggccgtgcc > 2:319709‑M1/1‑60 (MQ=255) tCATGGCCACGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGG‑CCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGACGACCACGCGTACGGTGGc < 1:48584/150‑1 (MQ=255) ccACGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGG‑CCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGATTAGGCAGCTACGACGACAACGCGTACGGTAGCTTCAAc > 2:497279/1‑150 (MQ=255) aaaGAATTCTGGAGGATGAAAAAGACAAAGGGCACGG‑CCTGTCGAAAACAGGACCGTGCCCGAt < 2:148782/64‑1 (MQ=255) aaaGAATTCTGGAGGATGAAAAAGACAAAGGGCACGG‑CCTGTCGAAAACAGGACCGTGCCCGAt > 1:148782/1‑64 (MQ=255) aaGAATTCTGGAGGATGAAAAAGACAAAGGGCACGGcctgtcgaaaacaggaccgtgccctttgtctttttcatcctccagaattctttcgtggccatgaacgagatcaccacctccgaacagcttgacctgcaaaccgcagccctgaag > 2:338146‑M1/1‑36 (MQ=255) aaaaaGACAAAGGGCACGG‑CCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGACGACCACGCGTACGGTGGCTTCAACGTCGCTGTGCAGGTGCACGGCTa > 1:514307/1‑150 (MQ=255) ggCACGG‑CCTGTCGAAAACAGGAccgtgccctttgtctttttcatcctccagaattctttcgtggccatgaacgagatcacca > 2:319709‑M2/1‑23 (MQ=255) ggCACGG‑CCTGTCGAAAACAGGAccgtgccctttgtctttttcatcctccagaattctttcgtggccatgaacgagataacca < 1:319709‑M2/83‑61 (MQ=255) ggCACGG‑CCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAg < 2:33388/84‑1 (MQ=255) ggCACGG‑CCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAg > 1:33388/1‑84 (MQ=255) aCGG‑CCTGTCGAAAACAGGAccgtgccctttgtctttttcatcctccagaattctttcgtggccatgaacgagatcaccacctccgaacagcttgacctgcaaaccgcagccctgaaggtaccgccgcattccatcgaggacgaacaggc < 1:252499‑M2/150‑131 (MQ=255) ggtcctgttttcgacaggccgtgccctttgtctttttcatcctccagaattctttcgtggccatgaacgagatcaccacctccgaacagcttgacctgcaaaccgcagccctgaaggtaccgccgcattccatcgaggccgaacaggccg > 2:335334‑M1/1‑2 (MQ=255) | TCAGGCCACCGAGCACGGCCTGTTCGGCCTCGATGGAATGCGGCGGTACCTTCAGGGCTGCGGTTTGCAGGTCAAGCTGTTCGGAGGTGGTGATCTCGTTCATGGCCACGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGG‑CCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGACGACCACGCGTACGGTGGCTTCAACGTCGCTGTGCAGGTGCACGGCTACGTCGTATTCGCCAAC > NC_002947/5542644‑5542937 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |