New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 807388	26 (1.120)	3 (0.130)	3/242	NT	10.5%	coding (649/708 nt)	PP_0694	hypothetical protein
	?	NC_002947	= 807416	26 (1.160)					coding (621/708 nt)	PP_0694	hypothetical protein

TCCAGCGGGAACAGGCCAAGGCTGTAGCCGGCGGTGTTGAGCAATGCGAAGCGGCGGATGCCGTAGCGTTCCTGGCTCATG‑CGTCAATCTCCTGTTGCTCTT‑CGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTTTCTTCCTCGACCAGTACCGGGGTCGGCAGCGGCAGGGCGCTGTGCAGGGTGGCGGCCAGGTCGCGGTCCTGCTGTACCGAGA  >  NC_002947/807253‑807534                                                                                                                                          |                                                                                                                                                   tCCAGCGGGAACAGGCCAAGGCTGTAGCCGGCGGTGTTGAGCAATGCGAAGCGGCGGATGCCGTAGCGTTCCTGTCTCATGACCTAAATTT‑‑AGCAACTTTTGGGTAGAGTGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCCGGa                                                                                                                                      >  1:228513/1‑150 (MQ=255) tCCAGCGGGAACAGGCCAAGGCTGTAGCCGGCGGTGTTGAGCAATGCGAAGCGGCGGATGCCGTAGCGTTCCTGGCTCATG‑CGTCAATCTCCTGTTGCTCTT‑CGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGa                                                                                                                                      >  1:573347/1‑150 (MQ=255)               gCCAAGGCTGTAGCCGGCGGTGTTGAGCAATGCGAAGCGGCGGATGCCGTAGCGTTCCTGGCTCATG‑CGTCAATCTCCTGTTGCTCTT‑CGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCg                                                                                                                        >  1:9237/1‑150 (MQ=255)                       tGTAGCCGGCGGTGTTGAGCAATGCGAAGCGGCGGATGCCGTAGCGTTCCTGGCTCATG‑CGTCAATCTCCTGTTGCTCTT‑CGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGgtc                                                                                                                >  1:92935/1‑150 (MQ=255)                        gTAGCCGGCGGTGTTGAGCAATGCGAAGCGGCGGATGCCGTAGCGTTCCTGGCTCATG‑CGTCAATCTCCTGTTGCTCTT‑CGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTcgacctcacgcctttccagggcgaggaaagcgaagag                                                                                                               <  2:155073‑M1/150‑38 (MQ=255)                         tAGCCGGCGGTGTTGAGCAATGCGAAGCGGCGGATGCCGTAGCGTTCCTGGCTCATG‑CGTCAATCTCCTGTTGCTCTT‑CGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGgtcgt                                                                                                              <  1:297461/150‑1 (MQ=255)                               gcggTGTTGAGCAATGCGAAGCGGCGGATGCCGTAGCGTTCCTGGCTCATG‑CGTCAATCTCCTGTTGCTCTT‑CGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTcgacctcacgcctttccagggcgaggaaagcgaaga                                                                                                                <  2:104548‑M1/142‑37 (MQ=255)                               gcggTGTTGAGCAATGCGAAGCGGCGGATGCCGTAGCGTTCCTGGCTCATG‑CGTCAATCTCCTGTTGCTCTT‑CGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTcgacctcacgcctttccagggcgaggaaagcgaaga                                                                                                                >  1:104548‑M1/1‑106 (MQ=255)                               gcggTGTTGAGCAATGCGAAGCGGCGGATGCCGTAGCGTTCCTGGCTCATG‑CGTCAATCTCCTGTTGCTCTT‑CGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCgg                                                                                                                   >  1:410000/1‑139 (MQ=255)                               gcggTGTTGAGCAATGCGAAGCGGCGGATGCCGTAGCGTTCCTGGCTCATG‑CGTCAATCTCCTGTTGCTCTT‑CGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCgg                                                                                                                   <  2:410000/139‑1 (MQ=255)                                 ggTGTTGAGCAATGCGAAGCGGCGGATGCCGTAGCGTTCCTGGCTCATG‑CGTCAATCTCCTGTTGCTCTT‑CGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACgg                                                                                                      <  2:573347/150‑1 (MQ=255)                                 ggTGTTGAGCAATGCGAAGCGGCGGATGCCGTAGCGTTCCTGGCTCATG‑CGTCAATCTCCTGTTGCTCTT‑CGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACgg                                                                                                      >  2:454399/1‑150 (MQ=255)                                               tgacgcggcgGATGCCGTAGCGTTCCTGGCTCATG‑CGTCAATCTCCTGTTGCTCTT‑CGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGgc                                                                                        >  2:340942/5‑150 (MQ=255)                                                      gcggATGCCGTAGCGTTCCTGGCTCATG‑CGTCAATCTCCTGTTGCTCTT‑CGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTttct                                                                                 <  1:85441/150‑1 (MQ=255)                                                                      tCCTGGCTCATG‑CGTCAATCTCCTGTTGCTCTT‑CGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTTTCTTCCTCGACCAGTCCCg                                                                 <  2:9237/150‑1 (MQ=255)                                                                           gCTCATG‑CGTCAATCTCCTGTTGCTCTT‑CGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAg                                                                                                                                   >  1:566465/1‑79 (MQ=255)                                                                           gCTCATG‑CGTCAATCTCCTGTTGCTCTT‑CGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAg                                                                                                                                   <  2:566465/79‑1 (MQ=255)                                                                             tCATG‑CGTCAATCTCCTGTTGCTCTT‑CGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTttc                                                                                  <  1:223057/126‑1 (MQ=255)                                                                             tCATG‑CGTCAATCTCCTGTTGCTCTT‑CGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTttc                                                                                  >  2:223057/1‑126 (MQ=255)                                                                                      cAATCTCCTGTTGCTCTT‑CGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTTTCTTCCTCGACCAGTACCGGGGTcggcagcggca                                                  <  1:454399/150‑1 (MQ=255)                                                                                         tctcCTGTTGCTCTT‑CGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTTTCTTCCTCGACCAGTACCGGGGTCGGCAGCGGCAggg                                               >  2:169903/1‑150 (MQ=255)                                                                                            ccTGTTGCTCTT‑CGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTTTCTTCCTCGACCAGTACCGGGGTCGGCAGCGGCAGGgcgc                                            >  2:405371/1‑150 (MQ=255)                                                                                                      tt‑CGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTTTCTTCCTCGACCAGTACCGGGGTCGGCAGCGGCAGGGCGCTGTGCAGGGt                                  >  2:10130/1‑150 (MQ=255)                                                                                                      tt‑CGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTTTCTTCCTCGACCAGTACCGGGGTCGGCAGCGGCAGGGCGCTGTGCAGGGt                                  >  1:393258/1‑150 (MQ=255)                                                                                                                  cccGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTTTCTTCCTCGACCAGTACCGGGGTCGGCAGCGGCAGGGCGCTGTGCAGGGTGGCGGCCAGGt                       >  2:386582/1‑150 (MQ=255)                                                                                                                      ggCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGgcgc                                                                                      <  1:565859/83‑1 (MQ=255)                                                                                                                      ggCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGgcgc                                                                                      >  2:565859/1‑83 (MQ=255)                                                                                                                                  ctctTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGagcgaagaggacgccctggcccgggccatccgcgaagagcaacaggagattgacgcatgagccaggaacgctacggcatccgccgcttcgcattgctcaacaccgccggctac       <  2:155073‑M2/150‑114 (MQ=255)                                                                                                                                  ctctTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTTTCTTCCTCGACCAGTACCGGGGTCGGCAGCGGCAGGGCGCTGTGCAGGGTGGCGGCCAGGTCGCGGTCCTGCTGTAc       <  1:340942/150‑1 (MQ=255)                                                                                                                                   tctTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGagcgaagaggacgccctggcccgggccatccgcgaagagcaacaggagattgacgcatgagccaggaacgctacggcatccgccgcttcgcattgctcaacaccgc              <  2:104548‑M2/142‑107 (MQ=255)                                                                                                                                   tctTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGagcgaagaggacgccctggcccgggccatccgcgaagagcaacaggagattgacgcatgagccaggaacgctacggcatccgccgcttcgcattgctcaacaccgc              >  1:104548‑M2/1‑36 (MQ=255)                                                                                                                                     ttCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTTTCTTCTTCGACCAGTACCGGGGTCGGCAGCGGCAGGGCGCTGGGCAGGGTGGCGGCCAGGTCGCGGGCCTGCTGTACCga    >  1:21144/1‑150 (MQ=255)                                                                                                                                       cGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTTTCTTCCTCGACCAGTACCGGGGTCGGCAGCGGCAGGGCGCTGTGCAGGGTGGCGGCCAGGTCGCGGTCCTGCTGTACCgaga  <  2:228513/150‑1 (MQ=255)                                                                                                                                          |                                                                                                                                                   TCCAGCGGGAACAGGCCAAGGCTGTAGCCGGCGGTGTTGAGCAATGCGAAGCGGCGGATGCCGTAGCGTTCCTGGCTCATG‑CGTCAATCTCCTGTTGCTCTT‑CGCGGATGGCCCGGGCCAGGGCGTCCTCTTCGCTTTCCTCGCCCTGGAAAGGCGTGAGGTCGAGCGGGTCGTCGGTACGGTTGAGTTCTTCGGCGCTTTCTTCCTCGACCAGTACCGGGGTCGGCAGCGGCAGGGCGCTGTGCAGGGTGGCGGCCAGGTCGCGGTCCTGCTGTACCGAGA  >  NC_002947/807253‑807534

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.