| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1769892 | 18 (0.780) | 4 (0.180) | 4/238 | NT | 18.1% | coding (598/3000 nt) | PP_1579 | hypothetical protein |
| ? | NC_002947 | = 1769914 | 19 (0.860) | coding (620/3000 nt) | PP_1579 | hypothetical protein | |||||
CCCGCTTCGTGAACCAGCGTGAACTTCACACCAGCCTGTGCTTGTGCGTGGGAGCGGGCTCGCACTCGATCTTGCCCAGCAGCATCAAGATCGGAGATACCCCGCTGGCTGCCTTCGGCGCCGATGTGTCGTATGCGTTCTACGGACCGGGGGAGAGCCTTGCCGGCGATCTCCGGTCGGAAAACTGGTATTCGGTAGGGGAGGTGGGCGGCACCGATGCCGGCACCTCTGGCCTAGACACCGCTTCCACGGCCACTGGCGGCACCTCGGTAATTGCCGACGCGCTGGTATTGGGCGGG > NC_002947/1769743‑1770041 | cccGCTTCGTGAACCAGCGTGAACTTCACACCAGCCTGTGCTTGTGCGTGGGAGCGGGCTCGCACTCGATCTTGCCCAGCAGCATCAAGATCGGAGATACCCCGCTGGCTGCCTTCGGCGCCGATGTGTCGTATGCGTTCTACGGACCGG < 1:531642‑M1/150‑1 (MQ=255) ccGCTTCGTGAACCAGCGTGAACTTCACACCAGCCTGTGCTTGTGCGTGGGAGCGGGCTCGCACTCGATCTTGCCCAGCAGCATCAAGATCGGAGATACCCCGCTGGCTGCCTTCGGCGCCGATGTGTCGTATGCGTTCTACGGACCggg < 1:528923/150‑1 (MQ=255) tCGTGAACCAGCGTGAACTTCACACCAGCCTGTGCTTGTGCGTGGGAGCGGGCTCGCACTCGATCTTGCCCAGCAGCATCAAGATCGGAGATACCCCGCTGGCTGCCTTCGGCGCCGATGTGTCGTATGCGTTCTACGGACCGGGGgaga < 1:484625/150‑1 (MQ=255) gAACCAGCGTGAACTTCACACCAGCCTGTGCTTGTGCGTGGGAGCGGGCTCGCACTCGATCTTGCCCAGCAGCATCAAGATCGGAGATACCCCGCTGGCTGCCTTCGGCGCCGATGTGTCGTATGCGTTCTACGGACCGGGGGAGAGccc > 2:202610/1‑149 (MQ=255) ccAGCGTGAACTTCACACCAGCCTGTGCTTGTGCGTGGGAGCGGGCTCGCACTCGATCTTGCCCAGCAGCATCAAGATCGGAGATACCCCGCTGGCTGCCTTCGGCGCCGATGTGTCGTATGCGTTCTACGGACCGGTGGAGAGCCTTGc < 1:609519/150‑1 (MQ=255) cAGCGTGAACTTCACACCAGCCTGTGCTTGTGCGTGGGAGCGGGCTCGCACTCGATCTTGCCCAGCAGCATCAAGATCGGAGATACCCCGCTGGCTGCCTTCGGCGCCGATGTGTCGTATGCGTTCTACGGACCGGGGGAGAGCCTTGcc > 1:88964/1‑150 (MQ=255) tCACACCAGCATGTGCTTGTGCGTGGGAGCGGGCTCGCACTCGATCTTGCCCAGCAGCATCAAGATCGGAGATACCCCGCTGGCTGCCTTCGGCGCCGATGTGCCGTATGCGTTCTACTCTCCGGGGGAGAGCCTTGCCGGCGATCTccg > 1:273689‑M2/1‑147 (MQ=255) acacCAGCCTGTGCTTGTGCGTGGGAGCGGGCTCGCACTCGATCTTGCCCAGCAGCATCAAGATCGGAGATACCCCGCTGGCTGCCTTCGGCGCCGATGTGTCGTATGCGTTCTACGGACCGGGGGAGAGCCTTGCCGGCGATCTccggt > 1:595766‑M2/1‑145 (MQ=255) gggAGCGGGCTCGCACTCGATCTTGCCCAGCAGCATCAAGATCGGAGATACCCCGCTGGCTGCCTTCGGCGCCGATGTGTCGTATGCGTTCTACGGACCGGGGGAGAGCCTTGCCGGCGATCTCCGGTCGGAAAACTGGTATTCGGTAgg < 1:106596/150‑1 (MQ=255) gAGCGGGCTCGCACTCGATCTTGCCCAGCAGCATCAAGATCGGAGATACCCCGCTGGCTGCCTTCGGCGCCGATGTGTCGTATGCGTTCTACGGACCGGGGGAGAGCCTTGCCGGCGATCTCCGGTCGGAAAACTGGt < 2:464950/138‑1 (MQ=255) gAGCGGGCTCGCACTCGATCTTGCCCAGCAGCATCAAGATCGGAGATACCCCGCTGGCTGCCTTCGGCGCCGATGTGTCGTATGCGTTCTACGGACCGGGGGAGAGCCTTGCCGGCGATCTCCGGTCGGAAAACTGGt > 1:464950/1‑138 (MQ=255) cTCGCACTCGATCTTGCCCAGCAGCATCAAGATCGGAGATACCCCGCTGGCTGCCTTCGGCGCCGATGTGTCGTATGCGTTCTACGGACCGGGGGAGAGCCTTGCCGGCGATCTCCGGTCGGAAAACTGGTACTCGGTAGGGGAGGTggg < 2:316286/150‑1 (MQ=255) cACTAGATCTTGGCAACCAGCATCAAGATCAGAGATACCCCGCTGGCTGCTTTCGGCGCCGATGTGTCGTATGCGTTCTACGGACCGGGGGAGAGCCTTGCCGGCGATCTCCGGTCGGAAAACTGGTATTCGGTAGGGGAGGTGggcggc > 2:563542/1‑150 (MQ=255) aCTCGATCTTGCCCATCAGCATCAAGATCGGAGATACCCCGCTGGCTGCCTTCGGCGCCGATGTGTCGTATGCGTTCTACGGACCGGagatcgccggcaaggctctcccccggtc < 2:67444‑M1/115‑29 (MQ=255) aCTCGATCTTGCCCAGCAGCATCAAGATCGGAGATACCCCGCTGGCTGCCTTCGGCGCCGATGTGTCGTATGCGTTCTACGGACCGGagatcgccggcaaggccctcccccggtc > 1:67444‑M1/1‑87 (MQ=255) aCTCGATCTTGCCCAGCAGCATCAAGATCGGAGATACCCCGCTGGCTGCCTTCGGCGCCGATGTGTCGTATGCGTTCTACGGACCGGGGGAGAGCCTTGCCGGCGATCTccg < 2:397085‑M2/112‑4 (MQ=255) aCTCGATCTTGCCCAGCAGCATCAAGATCGGAGATACCCCGCTGGCTGCCTTCGGCGCCGATGTGTCGTATGCGTTCTACGGACCGGGGGAGAGCCTTGCCGGCGATCTcag > 1:397085‑M2/1‑109 (MQ=255) cTCGCTCTTGCCCAGCAGCATCAAGATCGGAGATACCCCGCTGGCTGCCTTCGGCGCCGATGTGTCGTATGCGTTCTACGGACCGGGGGAGAGCCTTGCCGGCGATCTCCGGTCGGAAAACTGGTATTCGGTAGGGGAGGTGGGCGGCAc < 2:88964/150‑1 (MQ=255) cTCGATCTTGCCCAGCAGCATCAAGATCGGAGATACCCCGCTGGCTGCCTTCGGCGCCGATGTGTCGTATGCGTTCTACGGACCGGGGGAGAGCCTTGCCGGCGATCTCCGGTCGGAAAACTGGTATTCGGTAGGGGAGGTGGGCGGCAc > 2:147943/1‑150 (MQ=255) gCCCAGCAGCATCAAGATCGGAGATACCCCGCTGGCTGCCTTCGGCGCCGATGTGTCGTATGCGTTCTACGGACCGGGGGAGAGCCTTGCCGGCGATCTCCGGTCGGAAAACTGGTATTCGGTAGGGGAGGTGGGCGGCACCGATGCCgg > 2:336495/1‑150 (MQ=255) ccAGCAGCATCAAGATCGGAGATACCCCGCTGGCTGCCTTCGGCGCCGATGTGTCGTATGCGTTCTACGGACCGGGGGAGAGCCTTGCCGGCGATCTCCGGTCGGAAAACTGGTATTCGGTAGGGGAGGTGGGCGGCACCGATGCCGGCa > 1:57245/1‑150 (MQ=255) cagcagCATCAAGATCGGAGATACCCCGCTGGCTGCCTTCGGCGCCGATGTGTCGTATGCGTTCTACGGACCGGGGGAGAGCCTTGCCGGCGATCTCCGGTCGGAACACTGGTATTCGGTAGGGGAGGTGGGCGGCACCGATGCCGGCAc < 2:447850/150‑1 (MQ=255) ccccGCTTGCTGCCTTCGGCGCCGATGTGTCGTATGCGTTCTACGGACCGGagatcgccggcaaggctctcccccggtcc > 1:181355‑M1/1‑51 (MQ=255) ccccGCTGGCTGCCTTCGGCGCCGATGTGTCGTATGCGTTCTACGGACCGGagatcgccggcaaggctctcccccgctcc < 2:181355‑M1/80‑30 (MQ=255) ccGCTGGCTGCCTTCGGCGCCGATGTGTCGTATGCGTTCTACGGACCGGGGGAGAGCCTTGCCGGCGATCTCCGGTCGGAAAACTGGTATTCGGTAGGGGAGGTGGGCGGCACCGATGCCGGCACCTCTGGCCTAGACACCGCTTCCACg > 2:207978/1‑150 (MQ=255) gATGTGTCGTATGCGTTCTACGGACCGGGGGAGAGCCTTGCCGGCGATCTCCGGTCGGAAAACTGGTATTCGGTAGGGGAGGTGGGCGGCACCGATGCCGGCACCTCTGGCCTAGACACCGCTTCCACGGCCACTGGCGGCACCTCGGTa > 2:149883/1‑150 (MQ=255) aTGTGTCGTATGCGTTCTACGGACCGGGGGAGAGCCTTGCCGGCGATCTCCGGTCGGAAAACTGGTATTCGGTAGGGGAGGTGGGCGGCACCGATGCCGGCACCTCTGGCCTAGACACCGCTTCCACGGCCACTGGCGGCACCTCGGTaa < 1:149883/150‑1 (MQ=255) cGGACCGGGGGAGAGCCTTGCCGGCGATCTCCGGTCGGAAAACTGGTATTCGGTAGGGGAGGTGGGCGGCACCGATGCCGGCACCTCTGGCCTAGACACCGCTTCCACGGCCACTGGCGGCACCTCGGTAATTGCCGACGCGCTGGTAtt > 1:275104/1‑150 (MQ=255) ggAGCGGGGGAGAGCCTTGCCGGCGATCTccggtccgtagaacgcatacgacacatcggcgccgaaggcagccagcgggg < 2:181355‑M2/80‑52 (MQ=255) ggACCGGGGGAGAGCCTTGCCGGCGATCTccggtccgtagaacgcatacgacacatcggcgccgaaggcagcaagcgggg > 1:181355‑M2/1‑29 (MQ=255) gACCGGGGGAGGGCCTTGCCGGCGATCTccggtccgtagaacgcatacgacacatcggcgccgaaggcagccagcggggtatctccgatcttgatgctgctgggcaagatcgagt > 1:67444‑M2/1‑28 (MQ=255) gACCGGGGGAGAGCCTTGCCGGCGATCTccggtccgtagaacgcatacgacacatcggcgccgaaggcagccagcggggtatctccgatcttgatgctgatgggcaagatcgagt < 2:67444‑M2/115‑88 (MQ=255) aCCGGagatcgccggcaaggctctcccccggtccgtagaacgcatacgacacatcggcgccgaaggcagccagcggggtatctccgatcttgatgctgctgggcaagatcgagtgcgagcccgctcccacgcacaagcacaggctggtgt > 1:595766‑M1/1‑5 (MQ=255) ctgagatcgccggcaaggctctcccccggtccgtagaacgcatacgacacatcggcgccgaaggcagccagcggggtatctccgatcttgatgctgctgggcaagatcgagt > 1:397085‑M1/3‑3 (MQ=255) cGGagatcgccggcaaggctctcccccggtccgtagaacgcatacgacacatcggcgccgaaggcagccagcggggtatctccgatcttgatgctgctgggcaagatcgagt < 2:397085‑M1/112‑110 (MQ=255) cGGagatcgccggcaaggctctcccccggagagtagaacgcatacggcacatcggcgccgaaggcagccagcggggtatctccgatcttgatgctgctgggcaagatcgagtgcgagcccgctcccacgcacaagcacatgctggtgtga > 1:273689‑M1/1‑3 (MQ=255) ggggAGAGCCTTGCCGGCGATCTCCGGTCGGAAAACTGGTATTCGGTAGGGGAGGTGGGCGGCACCGATGCCGGCACCTCTGGCCTAGACACCGCTTCCACGGCCACTGGCGGCACCTCGGTAATTGCCGACGCGCTGGTATTGGGCggg < 2:312984/150‑1 (MQ=255) | CCCGCTTCGTGAACCAGCGTGAACTTCACACCAGCCTGTGCTTGTGCGTGGGAGCGGGCTCGCACTCGATCTTGCCCAGCAGCATCAAGATCGGAGATACCCCGCTGGCTGCCTTCGGCGCCGATGTGTCGTATGCGTTCTACGGACCGGGGGAGAGCCTTGCCGGCGATCTCCGGTCGGAAAACTGGTATTCGGTAGGGGAGGTGGGCGGCACCGATGCCGGCACCTCTGGCCTAGACACCGCTTCCACGGCCACTGGCGGCACCTCGGTAATTGCCGACGCGCTGGTATTGGGCGGG > NC_002947/1769743‑1770041 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |