New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4012762 =	29 (1.250)	6 (0.270)	6/238	NT	19.8%	coding (554/900 nt)	mvaB	hydroxymethylglutaryl‑CoA lyase
	?	NC_002947	4012782 =	21 (0.950)					coding (574/900 nt)	mvaB	hydroxymethylglutaryl‑CoA lyase

TGTGCTTGGCTGCCCTTACGAGGGCAAGGTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGTATTCGACAGCTCGGTAGCCGGGCTGGGCGGCTG  >  NC_002947/4012640‑4012927                                                                                                                                               |                                                                                                                                                  tgtgCTTGGCTGCCCTTACGAGGGCAAGGTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGacct                                                                                                                                            <  1:426677/150‑4 (MQ=255)              ccTTACGAGGGCAAGGTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAg                                                                                                                               <  2:360132/150‑1 (MQ=255)              ccTTACGAGGGCAAGGTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAg                                                                                                                               <  1:493140/150‑1 (MQ=255)              ccTTACGAGGGCAAGGTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGAGCCCTGCACGACATGGACGATAACCGGTTCTCTCTGGGTGACCCTATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAg                                                                                                                               <  1:346238/150‑1 (MQ=255)                 tACGAGGGCAAGGTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTa                                                                                                                            <  2:281332/150‑1 (MQ=255)                               cAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGtt                                                                                                              >  1:604375/1‑150 (MQ=255)                                 gcgcCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCgg                                                                                                                                    >  2:429401/1‑126 (MQ=255)                                 gcgcCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCgg                                                                                                                                    <  1:429401/126‑1 (MQ=255)                                  cgcCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGc                                                                                                           <  1:376400/150‑1 (MQ=255)                                    ccGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCg                                                                                                         <  2:604375/150‑1 (MQ=255)                                               gCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCAt                                                                                              <  2:89478/150‑1 (MQ=255)                                                ccccGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAggtggt                                                                                                                                         >  1:109065/1‑106 (MQ=255)                                                ccccGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAggtggt                                                                                                                                         <  2:109065/106‑1 (MQ=255)                                                     cctggccgtaagtgtcatggaagtgtccggccaactgctcgcgcggtacctgggccgacaccacctcgaaCAGGCGACACCCGACGCCTGTTCGa                                                                                                                                               >  2:472062‑M1/71‑95 (MQ=255)                                                     cctggccgtaagtgtcatggaagtgtccggccaactgctcgcgcggtacctgggccgacaccacctcgaaCAGGCGACACCCGACGCCTGTTCGa                                                                                                                                               <  1:472062‑M1/25‑1 (MQ=255)                                                          ccGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGCGCCCGGGTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCAATGAGACTTACgg                                                                                   >  1:195518/1‑150 (MQ=255)                                                                ccTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTCCGGCCAGGc                                                                             >  2:503841/1‑150 (MQ=255)                                                                 tgtcatggaagtgtccggccaactgctcgcgcggtacctgggccgacaccacctcgaaCAGGCGACACCCGACGCCTGTTCGAggtg                                                                                                                                           >  1:183354‑M1/59‑87 (MQ=255)                                                                 tgtcatggaagtgtccggccaactgctcgcgcggtacctgggccgacaccacctcgaaCAGGCGACACCCGACGCCTGTTCGAggtg                                                                                                                                           <  2:183354‑M1/29‑1 (MQ=255)                                                                     aCGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTgg                                                                        >  2:569102/1‑150 (MQ=255)                                                                                               cTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAg                                              <  1:515486/150‑1 (MQ=255)                                                                                                        acCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGc                                     <  1:283557/150‑1 (MQ=255)                                                                                                         ccATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGTACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTTGAGGGCATCAGCg                                    >  1:281127/1‑150 (MQ=255)                                                                                                           aTCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGTa                                  >  1:284654/1‑150 (MQ=255)                                                                                                                  ccGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGTATTCGACa                           <  1:503841/150‑1 (MQ=255)                                                                                                                  cacctcgaacaggcgtcgggtgtcgcctgTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGaca                                                                                          <  2:183354‑M2/58‑1 (MQ=255)                                                                                                                  cacctcgaacaggcgtcgggtgtcgcctgTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGaca                                                                                          >  1:183354‑M2/30‑87 (MQ=255)                                                                                                                      tcgaacaggcgtcgggtgtcgcctgTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAgg                                                                              <  1:472062‑M2/70‑1 (MQ=255)                                                                                                                      tcgaacaggcgtcgggtgtcgcctgTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAgg                                                                              >  2:472062‑M2/26‑95 (MQ=255)                                                                                                                        ccGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCAAACGTCTATGCCATCCTGCTCGAGGGCATCAGCGTATTCGACAGCTCgg                     <  1:569102/150‑1 (MQ=255)                                                                                                                              gcgtcgggtgtcgcctgTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCtt                                                                          <  2:254327‑M2/74‑1 (MQ=255)                                                                                                                              gcgtcgggtgtcgcctgTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCtt                                                                          >  1:254327‑M2/18‑91 (MQ=255)                                                                                                                              GCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGTATTCGACAGCTCGGTAGCCg               <  2:462210‑M1/150‑1 (MQ=255)                                                                                                                                     ccGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGc                                                       <  2:200/103‑1 (MQ=255)                                                                                                                                     ccGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGc                                                       >  1:200/1‑103 (MQ=255)                                                                                                                                           cctgTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAgg                                             >  2:135106‑M2/5‑107 (MQ=255)                                                                                                                                           cctgTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAgg                                             <  1:135106‑M2/103‑1 (MQ=255)                                                                                                                                           cctgTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCAAGGCCTTTGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGTATTCGACAGCTCGGTAGCCGGGCTGGGCGGCTg  <  2:271886‑M2/146‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                  TGTGCTTGGCTGCCCTTACGAGGGCAAGGTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGTATTCGACAGCTCGGTAGCCGGGCTGGGCGGCTG  >  NC_002947/4012640‑4012927

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.