New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5080268 = | 15 (0.650) | 3 (0.140) | 3/234 | NT | 21.4% | intergenic (‑85/+83) | csrA/lysC | carbon storage regulator/aspartokinase |
? | NC_002947 | 5080305 = | 8 (0.370) | intergenic (‑122/+46) | csrA/lysC | carbon storage regulator/aspartokinase |
CGACGAGTCAGAATCAACATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAGGTACTTCTCTTCGAGCACCA > NC_002947/5080164‑5080439 | cgtacgcgcgctgcataccgcgttcgatctggatgctcctgcccgacagggcgagtaaggcgctgcctggaagggcgcggcttgccgcgcccttcgcgtttctgCTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAAcgc > 2:471000‑M1/105‑150 (MQ=255) aaaTCAACATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGcgcg < 2:349728/149‑1 (MQ=255) tttCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGccc > 2:473957/1‑150 (MQ=255) tctggatgctcctgcccgacagggcgagtaaggcgctgcctggaagggcgcggcttgccgcgcccttcgcgtttctgCTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGaa < 2:574799‑M1/49‑1 (MQ=255) tctggatgctcctgcccgacagggcgagtaaggcgctgcctggaagggcgcggcttgccgcgcccttcgcgtttctgCTCGCCGCACAAGGCAGGAAAGGACCTGCGCGGCGAGCAGAAACGCGaa > 1:574799‑M1/78‑126 (MQ=255) aaaaCATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAgcgc < 1:71395/150‑1 (MQ=255) tAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAAcg < 1:303887/99‑1 (MQ=255) tAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAAcg > 2:303887/1‑99 (MQ=255) tGGATATCGGGCCCGGGTCGCAGACGACAACCATTGCCCCGGTTACTCGCCGCACAAGGCAGGACCGTTCTTTCTCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGa < 1:473957/150‑1 (MQ=255) gacgacCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCa < 2:363907/150‑1 (MQ=255) ttcgcgtttctgctcgccgcgcaggtcctttcctgccttgtgcggcgagCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGa > 1:574799‑M2/50‑126 (MQ=255) ttcgcgtttctgctcgccgcgcaggtcctgtcctgccttgtgcggcgagCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGa < 2:574799‑M2/77‑1 (MQ=255) gcgtttctgctcgccgcgcaggtcctgtcctgccttgtgcggcgagCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACg > 2:471000‑M2/47‑150 (MQ=255) CGCCGCACAAGGCAGGACAGGGCCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGAGCGAACGCGGTATGCAGCGCGCGTACGGCCAGGTCCAg > 1:204737‑M1/1‑150 (MQ=255) gacCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAGGTACTTCTCTTCGAGcacca > 1:361660/1‑150 (MQ=255) | CGACGAGTCAGAATCAACATAGCTTTCTCCTTACGCAAAACATTCAGGGGTAACAGTCTTGGATATCGGGCCCGGGTCGCGGACGACGACCATGGCCCCGGTTACTCGCCGCACAAGGCAGGACAGGACCTGCGCGGCGAGCAGAAACGCGAAGGGCGCGGCAAGCCGCGCCCTTCCAGGCAGCGCCTTACTCGCCCTGTCGGGCAGGAGCATCCAGATCGAACGCGGTATGCAGCGCGCGTACGGCCAGCTCCAGGTACTTCTCTTCGAGCACCA > NC_002947/5080164‑5080439 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |