New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5669477	20 (0.870)	3 (0.150)	3/222	NT	12.8%	intergenic (+27/‑98)	ahcY/metF	adenosylhomocysteinase/5,10‑methylenetetrahydrofolate reductase
	?	NC_002947	= 5669498	23 (1.120)					intergenic (+48/‑77)	ahcY/metF	adenosylhomocysteinase/5,10‑methylenetetrahydrofolate reductase

GCGGCTTCGGCGGCGTGGTCACCCAGCTGACCAAGCAGCAAGCCGACTACATCGGCGTGACCGTCGAAGGCCCGTTCAAGCCGCACGCCTACCGCTACTAAGCGGCAAGCTTGAAGCTGCAAGTGGCAGGCAAAGGCATACCGTGCCGTTGCCACTTGCAGCTCCGGAAACACAGATCTTGAACGACGCCCAAGCCAGACCGGCCATCACCGATCTGGCTTTTACTTGCAGCTTGCCGCCAGACGCTTGTTGCCAGAGGAACGCCTGATGTCACAAGAACGCCGCTA  >  NC_002947/5669350‑5669636                                                                                                                                                     |                                                                                                                                           gcgGCTTCGGCGGCGTGGTCACCCAGCTGACCAAGCAGCAAGCCGACTACATCGGCGTGACCGTCGAAGGCCCGTTCAAGCCGCACGCCTACCGCTACTAAGCGGCAAGCTTGAAGCTGCAAGTGGCAGGCAAAGGCATACCGTGCCGTt                                                                                                                                           <  1:504325‑M2/150‑2 (MQ=255)      ttCGGCGGCGTGGTCACCCAGCTGACCAAGCAGCAAGCCGACTACATCGGCGTGACCGTCGAAGGCCCGTTCAAGCCGCACGCCTACCGCTACTAAGCGGCAAGCTTGAAGCTGCAAGTGGCAGGCAAAGGCATACCGTGCCGTtgccac                                                                                                                                      <  2:556522‑M2/150‑7 (MQ=255)         cgcggcgtGGTCACCCAGCTGACCAAGCAGCAAGCCGACTACATCGGCGTGACCGTCGAAGGCCCGTTCAAGCCGCACGCCTACCGCTACTAAGCGGCAAGCTTGAAGCTGCAAGTGGCAGGCAAAGGCATACCGTGCCGTtgccacttg                                                                                                                                   >  1:15223‑M2/2‑141 (MQ=255)                       ccAGCTGACCAAGCAGCAAGCCGACTACATCGGCGTGACCGTCGAAGGCCCGTTCAAGCCGCACGCCTACCGCTACTAAGCGGCAAGCTTGAAGCTGCAAGTGGCAGGCAAAGGCATACCGTGCCGTTGCCACTTGCAGCTCCGGAAaca                                                                                                                     >  2:333063/1‑150 (MQ=255)                                cAAGCAGCACGCCGACTACGTCGGCGTGACCGTCGAAGGCCCGTTCAAGCCGCACGCCTACCGCTACTAAGCGGCAAGCTTGAAGCTGCAAGTGGCAGGCAAAGGCATACCGTGCCGTTGCCACTTGCAGCTCCGGAAACACAGATCTTg                                                                                                            >  2:488000/1‑150 (MQ=255)                                  agcagcAAGCCGACTACATCGGCGTGACCGTCGAAGGCCCGTTCAAGCCGCACGCCTACCGCTACTAAGCGGCAAGCTTGAAGCTGCAAGTGGCAGGCAAAGGCATACCGTGCCGTTGCCACTTGCAGCTCCGGAAACACAGATCTTGaa                                                                                                          <  1:204268/150‑1 (MQ=255)                                            cGACTACATCGGCGTGACCGTCGAAGGCCCGTTCAAGCCGCACGCCTACCGCTACTAAGCGGCAAGCTTGAAGCTGCAAGTGGCAGGCAAAGGCATACCGTGCCGTTGCCACTTGCAGCTCCGGAAACACAGATCTTGAACGACGCCCaa                                                                                                <  2:504325/150‑1 (MQ=255)                                              aCTACATCGGCGTGACCGTCGAAGGCCCGTTCAAGCCGCACGCCTACCGCTACTAAGCGGCAAGCTTGAAGCTGCAAGTGGCAGGCAAAGGCATACCGTGCCGTTGCCACTTGCAGCTCCGGAAACACAGATCTTGAACGACGCCCAAGc                                                                                              <  2:418790/150‑1 (MQ=255)                                                                tCGAAGGCCCGTTCAAGCCGCACGCCTACCGCTACTAAGCGGCAAGCTTGAAGCTGCAAGTGGCAGGCAAAGGCATACCGTGCCGTTGCCACTTGCAGCTCCGGAAACACAGATCTTGAACGACGCCCAAGCCAGACCGGCCATCACCGa                                                                            >  2:77960/1‑150 (MQ=255)                                                                     ggCCCGTTCAAGCCGCACGCCTACCGCTACTAAGCGGCAAGCTTGAAGCTGCAAGTGGCAGGCAAAGGCATACCGTGCCGTTGCCACTTGCAGCTCCGGAAACACAGATCTTGAACGACGCCCAAGCCAGACCGGCCATCACCGATCTgg                                                                       <  1:77960/150‑1 (MQ=255)                                                                      gCCCGTTCAAGCCGCACGCCTACCGCTACTAAGCGGCAAGCTTGAAGCTGCAAGTGGCAGGCAAAGGCATACCGTGCCGTTGCCACTTGCAGCTCCGGAAACACAGATCTTGAACGACGCCCAAGCCAGACCGGCCATCACCGATCTGGc                                                                      >  1:298485/1‑150 (MQ=255)                                                                           ttCAAGCCGCACGCCTACCGCTACTAAGCGGCAAGCTTGAAGCTGCAAGTGGCAGGCAAAGGCATACCGTGCCGTTGCCACTTGCAGCTCCGGAAACACAGATCTTGAACGACGCCCAAGCCAGACCGGCCATCACCGATCTGGCTTTTa                                                                 <  1:521505/150‑1 (MQ=255)                                                                              aaGCCGCACGCCTACCGCTACTAAGCGGCAAGCTTGAAGCTGCAAGTGGCAGGCAAAGGCATACCGTGCCGTTGCCACTTGCAGCTCCGGAAACACAGATCTTGAACGACGCCCAAGCCAGACCGGCCATCACCGATCTGGCTTTTACtt                                                              >  1:179241/1‑150 (MQ=255)                                                                              aaGCCGCACGCCTACCGCTACTAAGCGGCAAGCTTGAAGCTGCAAGTGGCAGGCAAAGGCATACCGTGCCGTTGCCACTTGCAGCTCCGGAAACACAGATCTTGAACGACGCCCAAGCCAGACCGGCCATCACCGATCTGGCTTTTACtt                                                              >  2:415340/1‑150 (MQ=255)                                                                                              gCTACTAAGCGGCAAGCTTGAAGCTGCAAGTGGCAGGCAAAGGCATACCGTGCCGTTGCCACTTGCAGCTCCGGAAACACAGATCTTGAACGACGCCCAAGCCAGACCGGCCATCACCGATCTGGCTTTTACTTGCa                                                           <  1:393091/137‑1 (MQ=255)                                                                                              gCTACTAAGCGGCAAGCTTGAAGCTGCAAGTGGCAGGCAAAGGCATACCGTGCCGTTGCCACTTGCAGCTCCGGAAACACAGATCTTGAACGACGCCCAAGCCAGACCGGCCATCACCGATCTGGCTTTTACTTGCa                                                           >  2:393091/1‑137 (MQ=255)                                                                                               ctactaAGCGGCAAGCTTGAAGCTGCAAGTGGCAGGCAAAGGCATACCGTGCCGTTGCCACTTGCAGCTCCGGAAACACAGATCTTGAACGACGCCCAAGCCAGACCGGCCATCACCGATCTGGCTTTTACTTGCAGCTTGCCGCCAGAc                                             <  2:550127/150‑1 (MQ=255)                                                                                                        ggCAAGCTTGAAGCTGCAAGTGGCAGGCAAAGGCATACCGTGCCGTTGCCACTTGCAGCTCCGGAAACACAGATCTTGAACGACGCCCAAGCCAGACCGGCCATCACCGATCTGGCTTTTACTTGCAGCTTGCCGCCAGACGCTTGTTGc                                    <  2:92405/150‑1 (MQ=255)                                                                                                                     cTGCAAGTGGCAGGCAAAGGCATACCGTGCCGTtgccacttgcagcttcaagcttgccgcttagtagcggtaggcgtgcggcttgaacgggccttcgacggtcacgccgatgtagtcggcttgctgcttggtcagctgggtgaccacgcc                       <  1:76576‑M2/150‑118 (MQ=255)                                                                                                                       gCAAGTGGCAGGCAAAGGCATACCGTGCCGTTGCCACTTGCAGCTCCGGAAACACAGATCTTGAACGACGCCCAAGCCAGACCGGCCATCACCGATCTGGCTTTTACTTGCAGCTTGCCGCCAGACGCTTGTTGCCAGAGGAACGCCTGa                     <  2:179241/150‑1 (MQ=255)                                                                                                                         aaGTGGCAGGCAAAGGCATACCGTGCCGTtgccacttgcagcttcaagcttgccgcttagtagcggtaggcgtgcggcttgaacgggccttcgacggtcacgccgatgtagtcggctt                                                   <  2:360102‑M2/118‑90 (MQ=255)                                                                                                                         aaGTGGCAGGCAAAGGCATACCGTGCCGTtgccacttgcagcttcaagcttgccgcttagtagcggtaggcgtgcggcttgaacgggccttcgacggtcacgccgatgtagtcggctt                                                   >  1:360102‑M2/1‑29 (MQ=255)                                                                                                                              gcaggcaAAGGCATACCGTGCCGTTGCCACTTGCAGCTCCGGAAACACAGATCTTGAACGACGCCCAAGCCAGACCGGCCATCACCGATCTGGCTTTTACTTGCAGCTTGCCGCCAGACGCTTGTTGCCAGAGGAACGCCTGATGTcaca              >  1:129199/1‑150 (MQ=255)                                                                                                                                aggcaAAGGCATACCGTGCCGTTGCCACTTGCAGCTCCGGAAACACAGATCTTGAACGACGCCCAAGCCAGACCGGCCATCACCGATCTGGCTTTTACTTGCAGCTTGCCGCCAGACGCTTGTTGCCAGAGGAACGCCTGATGTCACAAg            >  2:322167/1‑150 (MQ=255)                                                                                                                                  gcaAAGGCATACCGTGCCGTTGCCACTTGCAGCTCCGGAAACACAGATCTTGAACGACGCCCAAGCCAGACCGGCCATCACCGATCTGGCTTTTACTTGCAGCTTGCCGCCAGACGCTTGTTGCCAGAGGAACGCCTGATGTCACAAGaa          <  2:129199/150‑1 (MQ=255)                                                                                                                                    aaaGGCATACCGTGCCGTTGCCACTTGCAGCTCCGGAAACACAGATCTTGAACTACGCCCaa                                                                                                <  2:289781/62‑1 (MQ=255)                                                                                                                                    aaaGGCATACCGTGCCGTTGCCACTTGCAGCTCCGGAAACACAGATCTTGAACGACGCCCaa                                                                                                >  1:289781/1‑62 (MQ=255)                                                                                                                                         cATACCGTGCCGTTGCCACTTGCAGCTCCGGAAAAACAGATATTGAACGACGCCCAAGCCAGACCGGCCATCACCGATCTGGCTTTTACTTGCAGCTTGCCGCCAGACACTTGTTGCCAGAGGAACGCCTGATGTCACAAGAACGCCGCt   <  2:85203/150‑1 (MQ=255)                                                                                                                                          aTACCGTGCCGTTGCCACTTGCAGCTCCGGAAACACAGATCTTGAACGACGCCCAAGCCAGACCGGCCATCACCGATCTGGCTTTTACTTGCAGCTTGCCGCCAGACGCTTGTTGCCAGAGGAACGCCTGATGTCACAAGACCGCCGCTa  <  1:488000/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                           GCGGCTTCGGCGGCGTGGTCACCCAGCTGACCAAGCAGCAAGCCGACTACATCGGCGTGACCGTCGAAGGCCCGTTCAAGCCGCACGCCTACCGCTACTAAGCGGCAAGCTTGAAGCTGCAAGTGGCAGGCAAAGGCATACCGTGCCGTTGCCACTTGCAGCTCCGGAAACACAGATCTTGAACGACGCCCAAGCCAGACCGGCCATCACCGATCTGGCTTTTACTTGCAGCTTGCCGCCAGACGCTTGTTGCCAGAGGAACGCCTGATGTCACAAGAACGCCGCTA  >  NC_002947/5669350‑5669636

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.