New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	386636 =	18 (0.780)	5 (0.230)	5/240	NT	22.6%	intergenic (‑98/‑228)	ltaE/glyA‑I	low specificity l‑threonine aldolase/serine hydroxymethyltransferase
	?	NC_002947	386719 =	17 (0.770)					intergenic (‑181/‑145)	ltaE/glyA‑I	low specificity l‑threonine aldolase/serine hydroxymethyltransferase

CCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGCGCAAACAGCACAACAGCGAATGTCGTAAACGCGCCATTGCAAGGCGTGCGCAGGCATCTGACCCGGCCCCACCAGTCATAACATCGCCACAAAGGGCCACAGTGCCCCACGACAAAAAACGATCGCTGCCGGGAGATACACAATG  >  NC_002947/386577‑386866                                                                                                                                               |                                                                                                                                                    ccATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGCGCaaa                                                                                                                                              <  2:352000/150‑1 (MQ=255)                ttGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGCGCAAACAGCACAACAGCGaa                                                                                                                               >  2:126408/1‑150 (MQ=255)                       gcgcgtttacgacattcgctgttgtgctgtttgcgccGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGCGCAAACAGCacaa                                                                                                                                      >  2:307869‑M1/38‑136 (MQ=255)                       gcgcgtttacgacattcgctgttgtgctgtttgcgccGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGCGCAAACAGCacaa                                                                                                                                      <  1:307869‑M1/99‑1 (MQ=255)                        aCAACCCGTGCAGCTTTTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGCGCAAACAGCacaaca                                                                                                                                    <  1:594/137‑1 (MQ=255)                        aCAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGCGCAAACAGCacaaca                                                                                                                                    >  2:594/1‑137 (MQ=255)                                           cTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAg                                                                                                                                                    <  1:174231/102‑1 (MQ=255)                                           cTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAg                                                                                                                                                    >  2:174231/1‑102 (MQ=255)                                            ttgtgctgtttgcgctggccctttcgcgggtgaacccgctcctacagtgattggcgtttgcaggaccattgtgggggcgggcgcgcccgcgaaggggccGGCGCAAACAGCACAACAGCGAATGTCGTAAACgcgc                                                                                                                 <  1:307869‑M2/37‑1 (MQ=255)                                            ttgtgctgtttgcgctggccctttcgcgggtgaacccgctcctacagtgattggcgtttgcaggaccattgtgggggcgggcgcgcccgcgaaggggccGGCGCAAACAGCACAACAGCGAATGTCGTAAACgcgc                                                                                                                 >  2:307869‑M2/100‑136 (MQ=255)                                                             gccctttcgcgggtgaacccgctcctacagtgattggcgtttgcaggaccattgtgggggcgggcgcgcccgcgaaggggccAGCGCAAACAGCACAACAGCGAATGTCGTAAACGCGCCATTGCAAGGCGTGCGCAGGCATCTGACCCg                                                                                  >  2:506459‑M2/83‑150 (MQ=255)                                                             GCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGCGCAAACAGCACAACAGCGAATGTCGTAAACGCGCCATTGCAAGGCGTGCGCAGGCATCTGACCCg                                                                                  <  1:98402‑M1/150‑1 (MQ=255)                                                               CCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGCGCAAACAGCACAACAGCGAATGTCGTAAACGCGCCATTGCAAGGCGTGCGCAGGCATCTGACCCGGc                                                                                <  1:355020‑M1/150‑1 (MQ=255)                                                                  ttcgcgggtgaacccgctcctacagtgattggcgtttgcaggaccattgtgggggcgggcgcgcccgcgaaggggccAGCGCAAACAGCACAACCGCGAATGTCGTAAACGCGCCATTGCAAGGCGTGCGCAGGCATCTGACCCGGcccc                                                                             <  1:506459‑M2/73‑1 (MQ=255)                                                                        ggtgaacccgctcctacagtgattggcgtttgcaggaccattgtgggggcgggcgcgcccgcgaaggggccAGCGCAAACAGCACAACAGCGAATGTCGTAAACGCGCCATTGCAAGGCGTGCGCAGGCATCTGACCCGGCCCCACCAGt                                                                       >  1:526598‑M2/72‑150 (MQ=255)                                                                         gcgcgcCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGCGCAAACAGCACAACAGCGAATGTCGTAAACGCGCCATTGCAAGGCGTGCGCAGGCATCTGACCCGGCCCCACCAGTc                                                                      <  1:546201/150‑1 (MQ=255)                                                                                                cTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGCGCAAACAGCACAACAGCGAATGTCGTAAACGCGCCATTGCAAGGCGTGCGCAGGCATCTGACCCGGCCCCACCAGTCATAACATCGCCACAAAGGGCcac                                               >  2:557703/1‑150 (MQ=255)                                                                                                      aCGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGCGCAAACAGCACAACAGCGAATGTCGTAAACGCGCCATTGCAAGGCGTGCGCAGGCATCTGACCCGGCCCCACCAGTCATAACATCGCCACAAAGGGCCACAGTGcc                                         >  2:157383/1‑150 (MQ=255)                                                                                                       cGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGCGCAAACAGCACAACAGCGAATGTCGTAAACGCGCCATTGCAAGGCGTGCGCAGGCATCTGACCCGGCCCCACCAGTCATAACATCGCCACAAAGGGCCACAGTGccc                                        <  1:126408/150‑1 (MQ=255)                                                                                                                   tAGGAGCGGGTTCACCCGCGAAAGGGCCAGCGCAAACAGCACAACAGCGAATGTCGTAAACGCGCCATTGCaa                                                                                                         <  2:489299/73‑1 (MQ=255)                                                                                                                   tAGGAGCGGGTTCACCCGCGAAAGGGCCAGCGCAAACAGCACAACAGCGAATGTCGTAAACGCGCCATTGCaa                                                                                                         >  1:489299/1‑73 (MQ=255)                                                                                                                      gAGCGGGTTCACCCGCGAAAGGGCCAGCGCAAACAGCACAACAGCGAATGTCGTAAACGCGCCATTGCAAGGCGTGCGCAGGCATCTGACCCGGCCCCACCAGTCATAACATCGCCACAAAGGGCCACAGTGCCCCACGACAAAAAACGa                         <  1:157383/150‑1 (MQ=255)                                                                                                                        gCGGGTTCACCCGCGAAAGGGCCAGCGCAAACAGCACAACAGCGAATGTCGTAAACGCGCCATTGCAAGGCGTGCGCAGGCATCTGACCCGGCCCCACCAGTCATAACATCGCCACAAAGGGCCACAGTGCCCCACGACAAAAAACGATc                       >  1:330269/1‑150 (MQ=255)                                                                                                                         cGGGTTCACCCGCGAAAGGGCCAGCGCAAACAGCACAACAGCGAATGTCGTAAACGCGCCATTGCAAGGCGTGCGCAGGCATCTGACCCGGCCCCACCAGTCATAACATCGCCACAAAGGGCCACAGTGCCCCACGACAAAAAAc                           >  2:388288/1‑145 (MQ=255)                                                                                                                         cGGGTTCACCCGCGAAAGGGCCAGCGCAAACAGCACAACAGCGAATGTCGTAAACGCGCCATTGCAAGGCGTGCGCAGGCATCTGACCCGGCCCCACCAGTCATAACATCGCCACAAAGGGCCACAGTGCCCCACGACAAAAAAc                           <  1:388288/145‑1 (MQ=255)                                                                                                                           ggTTCACCCGCGAAAGGGCCAGCGCAAACAGCACAACAGCGAATGTCGTAAACGCGCCATTGCAAGGCGTGCGCAGGCATCTGACCCGGCCCCACCAGTCATAACATCGCCACAAAGGGCCACAGTGCCCCACGACAAAAAACGATCGCt                    <  2:330269/150‑1 (MQ=255)                                                                                                                                aCCCGCGAAAGGGCCAGCGCAAACAGCACAACAGCGAATGTCGTAAACGCGCCATTGCAAGGCGTGCGCAGGCATCTGACCCGGCCCCACCAGTCATAACATCGCCACAAAGGGCCACAGTGCCCCACGACAAAAAACGATCGCTGCCgg               <  1:205085/150‑1 (MQ=255)                                                                                                                                  ccGCGAAAGGGCCAGCGCAAACAGCACAACAGCGAATGTCGTAAACGCGCCATTGCAAGGCGTGCGCAGGCATCTGACCCGGCCCCACCAGTCATAACATCGCCACAAAGGGCCACAGTGCCCCACGACAAAAAACGATCGCTGCCGGga             >  2:224463/1‑150 (MQ=255)                                                                                                                                      gAAAGGGCCAGCGCAAACAGCACAACAGCGAATGTCGTAAACGCGCCATTGCAAGGCGTGCGCAGGCATCTGACCCGGCCCCACCAGTCATAACATCGCCACAAAGGGCCACAGTGCCCCACGACAAAAAACGATCGCTGCCGGGAGATa         <  2:98402/150‑1 (MQ=255)                                                                                                                                             ccAGCGCAAACAGCACAACAGCGAATGTCGTAAACGCGCCATTGCAAGGCGTGCGCAGGCATCTGACCCGGCCCCACCAGTCATAACATCGCCACAAAGGGCCACAGTGCCCCACGACAAAAAACGATCGCTGCCGGGAGATACACAATg  <  1:557703‑M2/148‑1 (MQ=255)                                                                                                                                             ccAGCGCAAACAGCACAACAGCGAATGTCGTAAACGCGCCATTGCAAGGCGTGCGCAGGCATCTGACCCGGCCCCACCAGTCATAACATCGCCACAAAGGGCCACAGTGCCCCACGACAAAAAACGATCGCTGCCGGGAGATACACAATg  <  1:545008‑M2/148‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                    CCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGCGCAAACAGCACAACAGCGAATGTCGTAAACGCGCCATTGCAAGGCGTGCGCAGGCATCTGACCCGGCCCCACCAGTCATAACATCGCCACAAAGGGCCACAGTGCCCCACGACAAAAAACGATCGCTGCCGGGAGATACACAATG  >  NC_002947/386577‑386866

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.