New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 543813	33 (1.430)	3 (0.140)	3/238	NT	10.6%	coding (2050/4200 nt)	rpoC	DNA‑directed RNA polymerase subunit beta'
	?	NC_002947	= 543849	19 (0.860)					coding (2086/4200 nt)	rpoC	DNA‑directed RNA polymerase subunit beta'

CGGACGAGAAAGCCCGCATCATCGGTAACGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCGAAGGCAAGGAAGTCGAGCAAGAGTCCTTCAACTCGATGTACATGATGGCTGACTCGGGTGCGCGGGGTTCCGCAGCCCAGATCCGTCAGC  >  NC_002947/543703‑543981                                                                                                                                                   |                                                                                                                                     cGGACGAGAAAGCCCGCATCATCGGTAACGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGcga                                                                                                                                   <  1:589891‑M2/150‑4 (MQ=255)      gagaAAGCCCGCATCATCGGTAACGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGatgatg                                                                                                                              <  1:584302/150‑1 (MQ=255)           aGCCCGCATCATCGGTAACGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCaa                                                                                                                         <  2:33881/150‑1 (MQ=255)                 catcatCGGTAACGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATTATGTCCAACctccc                                                                                                                   <  2:23638/150‑3 (MQ=255)                  ttcatcGGTAGCGTTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCg                                                                                                                  >  1:99713/2‑150 (MQ=255)                      tcGGTAGCGTTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAag                                                                                                              <  2:99713/150‑1 (MQ=255)                          tAACGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGaa                                                                                                          <  2:589891/150‑1 (MQ=255)                           aaCGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGACAAGTACTAGGAAGATATCGACCTCAGGGCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAg                                                                                                         <  1:383169/150‑1 (MQ=255)                            aCGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAgg                                                                                                        <  2:69331/150‑1 (MQ=255)                                             aagGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGc                                                                                                                            <  1:614649/113‑1 (MQ=255)                                             aagGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGc                                                                                                                            >  2:614649/1‑113 (MQ=255)                                               ggAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATgg                                                                                                                             <  1:238863/110‑1 (MQ=255)                                               ggAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATgg                                                                                                                             >  2:238863/1‑110 (MQ=255)                                               ggAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCGAAGGCaa                                                                                     <  2:368512/150‑1 (MQ=255)                                                gAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCGAAGGCAAg                                                                                    <  2:494418/150‑1 (MQ=255)                                                      gagaGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGcc                                                                                                                           <  1:46489/105‑1 (MQ=255)                                                      gagaGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGcc                                                                                                                           >  2:46489/1‑105 (MQ=255)                                                        gagCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCGAAGGCAAGGAAGTCGa                                                                            <  1:289436/150‑1 (MQ=255)                                                                    cTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCGAAGGCAAGGAAGTCGAGCAAGAGTCCtt                                                                >  2:80985/1‑150 (MQ=255)                                                                           cTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGcgatgaccttgttgtacttctcgccctgggttaccaggccggaggcgtactggctctcgatttccttcacttcatcg                                                         <  1:395010‑M2/150‑78 (MQ=255)                                                                              gTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAg                                                                                                         <  1:189485/99‑1 (MQ=255)                                                                              gTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAg                                                                                                         >  2:189485/1‑99 (MQ=255)                                                                                    cAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCGAAGGCAAGGAAGTCGAGCAAGAGTCCTTCAACTCGATGTACatg                                                >  2:185444/1‑150 (MQ=255)                                                                                             aaGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCGAAGGCAAGGAAGTCGAGCAAGAGTCCTTCAACTCGATGTACATGATGGCTGAc                                       >  2:433133/1‑150 (MQ=255)                                                                                                   aacaaGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGatgatg                                                                                                                              >  2:14447/1‑57 (MQ=255)                                                                                                   aacaaGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGatgatg                                                                                                                              <  1:14447/57‑1 (MQ=255)                                                                                                             tCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGcgatgaccttgttgtacttctcgccctgggttaccaggccggaggcgtaccggctctcgatttccttcacttcatcggtagcgttacccatgatgcgggctttctcgtccg                       <  2:160696‑M2/150‑112 (MQ=255)                                                                                                              cGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGcgatgaccttgttgtacttctcgccctgggttaccaggccggaggcgtactggctctcgatttccttcacttcatcggtagcgttaccgatgatgcgggctttctcgtccgg                      >  2:395010‑M2/1‑38 (MQ=255)                                                                                                                       gTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCGAAGGCAAGGAAGTCGAGCAAGAGTCCTTCAACTCGATGTACATGATGGCTGACTCGGGTGCGCGGGGTTCCGCAGCCCa             <  1:93605/150‑1 (MQ=255)                                                                                                                         cGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCGAAGGCAAGGAAGTCGAGCAAGAGTCCTTCAACCCGATGTACATGATGGCTGACTCGGGTGCGCGGGGTTCCGCAGCCCAGa           <  2:221835/150‑1 (MQ=255)                                                                                                                               cGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCGAAGGCAAGGAAGTCGAGCAAGAGTCCTTCAACTCGATGTACATGATGGCTGACTCGGGTGCGCGGGGTTCCGCAGCCCAGATCCGTc     <  1:433133/150‑1 (MQ=255)                                                                                                                                  acgacgAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCGAAGGCAAGGAAGTCGAGCAAGAGTCCTTCAACTCGATGTACATGATGGCTGACTCGGGTGCGCGGGGTTCCGCAGCCCAGATCCGTCAGc  <  1:559743/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                     CGGACGAGAAAGCCCGCATCATCGGTAACGCTACCGATGAAGTGAAGGAAATCGAGAGCCAGTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTCATCGACTTGTGGTCGAAGGCGAACGACGAAGTGTCCAAGGCGATGATGGCCAACCTCTCGAAAGAGAAGGTCATCGACCGCGAAGGCAAGGAAGTCGAGCAAGAGTCCTTCAACTCGATGTACATGATGGCTGACTCGGGTGCGCGGGGTTCCGCAGCCCAGATCCGTCAGC  >  NC_002947/543703‑543981

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.