| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1794713 = | 17 (0.740) | 4 (0.180) | 4/236 | NT | 20.5% | coding (1889/2361 nt) | bamA‑I | outer membrane protein assembly factor |
| ? | NC_002947 | 1794737 = | 15 (0.690) | coding (1913/2361 nt) | bamA‑I | outer membrane protein assembly factor | |||||
GGAGTCCACCGTTCCGGGCAGCGACCTGTCGTTCTTCAAGCTTGACTACCGTGGCCAGCTGTTCAAGCCGATCACCAGCGACTACACCCTGCGCCTGCATACCGAGCTGGGCTATGGTGATGGTTACGGCAGCACCTCCGGT‑CTGCCGTTCTACGAGAACTATTTCGCGGGTGGTTTCAACTCCGTCCGTGGCTTCAAGGACAGCAGCCTGGGCCCGCGCAGTACCCCGAGCATCGGTGAGGCCGCAGGTGGCAAGCCAGGCACCATCGCCGACCCGGATCAGGATCCGT > NC_002947/1794588‑1794877 | ggAGTCCACCGTTCCGGGCAGCGACCTGTCGTTCTTCAAGCTTGACTACCGTGGCCAGCTGTTCAAGCCGATCACCAGCGACTACACCCTGCGCCTGCATACCGAGCTGGGCTATGGTGATGGTTACGGCAGCACCTCCGGT‑CTGCCGtt < 2:574220/150‑1 (MQ=255) gcgatggtgcctggcttgccacctgcggcctcacagtagcgcggggtactgcgcgggcccaggctgctgtccttgaagccacggacggagttgaaaccacccgcgaaatagttctcgtagaACGGCAGCACCTCCGGT‑CTGCCGTTCTAc > 1:189377‑M1/122‑150 (MQ=255) cACCGTTCCGGGCAGCGACCTGTCGTTCTTCAAGCTTGACTACCGTGGCCAGCTGTTCAAGCCGATCACCAGCGACTACACCCTGCGCCTGCATACCGAGCTGGGCTATGGTGATGGTTACGGCAGCACCTCCGGT‑CTGCCGTTCTACga < 2:560381/150‑1 (MQ=255) ccGGGCAGCGACCTGTCGTTCTTCAAGCTTGACTACCGTGGCCAGCTGTTCAAGCCGATCACCAGCGACTACACCCTGCGCCTGCATACCGAGCTGGGCTATGGTGATGGTTACGGCAGCACCTCCGGT‑CTGCCGTTCTACGAGAACTAt < 1:374735/150‑1 (MQ=255) gggCAGCGACCTGTCGTTCTTCAAGCTTGACTACCGTGGCTAGCTGTTCAAGCCGATCACCAGCGACTACACCCTGCGCCTGCATACCGAGCTGGGCTATGGTGATGGTTACGGCAGCACCTCCGGT‑CTGCCGTTCTACGAGAACTAttt < 2:366966/150‑1 (MQ=255) ggcctcaccgatgctcggggtactgcgcgggcccaggctgctgtccttgaagccacggacggagttgaaaccacccgcgaaatagttctcgtagaacggcagcacctccggtctgccgtTCTACGAGAACTATTTCGCGGGTGGTTTCaa < 2:31995‑M2/31‑1 (MQ=255) tcAAGCTTGACTACCGTGGCCAGCTGTTCAAGCCGATCACCAGCGACTACACCCTGCGCCTGCATACCGAGCTGGGCTATGGTGATGGTTACGGCAGCACCTCCGGT‑CTGCCGTTCTACGAGAACTATTTCGCGGGTGGTTTCAACtccg > 2:316887/1‑150 (MQ=255) aGCTTGACTACCGTGGCCAGCTGTTCACGCCGATCACCAGCTTCTTCGCCCTGCGCCTGCATACCGAGCTGGGCTATGGTGATGGTTACGGCAGCACCTCCGGT‑CTGCCGTTCTACGAGAACTATTTCGCGGGTGGTTTCAACtccgtcc < 1:138353/150‑1 (MQ=255) cAGCTGTTCAAGCCGATCACCAGCGACTACACCCTGCGCCTGCATACCGAGCTGGGCTATGGTGATGGTTACGGCAGCACCTCCGGT‑CTGCCGTTCTACGAGAACTATTTCGCGGGTGGTTTCAACTCCGTCCGTGGCTTCAAGGAcagc > 2:214308/1‑150 (MQ=255) cAGCTGTTCAAGCCGATCACCAGCGACTACACCCTGCGCCTGCATACCGAGCTGGGCTATGGTGATGGTTACGGCAGCACCTCCGGT‑CTGCCGTTCTACGAGAACTATTTCGCGGGTGGTTTCAACTCCGTCCGTGGCTTCAAGGAcagc > 2:190890/1‑150 (MQ=255) aaGCCGATCACCAGCGACTACACCCTGCGCCTGCATACCGAGCTGGGCTATGGTGATGGTTACGGCAGCACCTCCGGT‑CTGCCGTTCTACGAGAACTATTTCGCGGGTGGTTTCAACTCCGTCCGTGGCTTCAAGGACAGCAGCCTGGGc > 2:335235/1‑150 (MQ=255) tgtccttgaagccacggacggagttgaaaccacccgcgaaatagttctcgtagaacggcagcacctccggtctgccgtTCTACGAGAACTATTTCGCgg > 2:495293‑M2/79‑99 (MQ=255) tgtccttgaagccacggacggagttgaaaccacccgcgaaatagttctcgtagaacggcagcacctccggtctgccgtTCTACGAGAACTATTTCGCgg < 1:495293‑M2/21‑1 (MQ=255) cGACTACACCCTGCGCCTGCATACCGAGCTGGGCTATGGTGATGGTTACGGCAGCACCTCCGGT‑CTGCCGTTCTACGAGAACTATTTCGCGGGTGGTTTCAACTCCGTCCGTGGCTTCAAGGACAGCAGCCTGGGCCCGCGCAGTAcccc < 1:190890/150‑1 (MQ=255) aCTACACCCTGCGCCTGCATACCGAGCTGGGCTATGGTGATGGTTACGGCAGCACCTCCGGT‑CTGCCGTTCTACGAGAACTATTTCGCGGGTGGTTTCAACTCCGTCCGTGGCTTCAAGGACAGCAGCCTGGGCCCGCGCAGTACCCCGa < 1:241923/150‑1 (MQ=255) cTACACCCTGCGCCTGCATACCGAGCTGGGCTATGGTGATGGTTACGGCAGCACCTCCGGT‑CTGCCGTTCTACGAGAACTATTTCGCGGGTGGTTTCAACTCCGTCCGTGGCTTCAAGGACAGCAGCCTGGGCCCGCGCAGTACCCCGAg > 1:471195/1‑150 (MQ=255) ccTGCGCCTGCATACCGAGCTGGGCTATGGTGATGGTTACGGCAGCACCTCCGGT‑CTGCCGTTCTACGAGAACTATTTCGCGGGTGGTTTCAACTCCGTCCGTGGCTTCAAGGACAGCAGCCTGGGCCCGCGCAGTACCCCGAGCATCgg > 1:431613/1‑150 (MQ=255) ttgaaaccacccgcgaaatagttctcgtagaACGGCAG‑ACCGGAGGTGCTGCCGTTCTACGAGAACTATTTCGCGGGTGGTTTCAACTCCGTCCGTGGCTTCAAGGACAGCAGCCTGGGCCCGCGCAGTACCCCGAGCATCGGTGAGGcc < 2:31995‑M1/119‑1 (MQ=255) ccgcgaaatagttctcgtagaACGGCAG‑ACCGGAGGTGCTGCCGTTCTACGAGAACTATTTCGCGGGTGGTTTCAACTCCGTCCGTGGCTTCAAGGAca < 1:495293‑M1/78‑1 (MQ=255) ccgcgaaatagttctcgtagaACGGCAG‑ACCGGAGGTGCTGCCGTTCTACGAGAACTATTTCGCGGGTGGTTTCAACTCCGTCCGTGGCTTCAAGGAca > 2:495293‑M1/22‑99 (MQ=255) tGGGCTATGGTGATGGTTACGGCAGCACCTCCGGT‑CTGCCGTTCTACGAGAACTATTTCGCGGGTGGTTTCAACTCCGTCCGTGGCTTCAAGGACAGCAGCCTGGGCCCGCGCAGTACCCCGAGCATCGGTGAGGCCGCAGGTGGCAAGc > 2:543367/1‑150 (MQ=255) ggCTATGGTGATGGTTACGGCAGCACCTCCGGT‑CTGCCGTTGGACGAGAACTATTTCGCGGGTGGTTTCAACTCCGTCCGTGGCTTCAAGGACAGCAGCCTGGGCGCGCGCAGTACCCCGAGCATCGGTGAGGCCGCAGGTGGCAAGCCa > 2:19987/1‑150 (MQ=255) gtagaacggcagaccggaggtgctgccgtTCTACGAGAACTATTTCGCGGGTGGTTTCAACTCCGTCCGTGGCTTCAAGGACAGCAGCCTGGGCCCGCGCAGTACCCCGCGCTACTGTGAGGCCGCAGGTGGCAAGCCAGGCACCATCGc > 1:189377‑M2/30‑150 (MQ=255) gTTACGGCAGCACCTCCGGT‑CTGCCGTTCTACGAGAACTATTTCGCGGGTGGTTTCAACTCCGTCCGTGGCTTCAAGGACAGCAGCCTGGGCCCGCGCAGTACCCCGAGCATCGGTGAGGCCGCAGGTGGCAAGCCAGGCACCATCGCCg > 1:256182/1‑150 (MQ=255) AGCACCTCCGGT‑CTGCCGTTCTACGAGAACTATTTCGCGGGTGGTTTCAACTCCGTCCGTGGCTTCAAGGACAGCAGCCTGGGCCCGCGCAGTACCCCGAGCATCGGTGAGGCCGCAGGTGGCAAGCCAGGCACCATCGCCGACCCGGAt > 1:543367‑M1/1‑150 (MQ=255) gT‑CTGCCGTTCTACGAGAACTATTTCGCGGGTGGTTTCAACTCCGTCCGTGGCTTCAAGGACAGCAGCCTGGGCCCGCGCAGTACCCCGAGCATCGGTGAGGCCGCAGGTGGCAAGCCAGGCACCATCGCCGACCCGGATCAGGATCCGt < 1:214308/150‑1 (MQ=255) | GGAGTCCACCGTTCCGGGCAGCGACCTGTCGTTCTTCAAGCTTGACTACCGTGGCCAGCTGTTCAAGCCGATCACCAGCGACTACACCCTGCGCCTGCATACCGAGCTGGGCTATGGTGATGGTTACGGCAGCACCTCCGGT‑CTGCCGTTCTACGAGAACTATTTCGCGGGTGGTTTCAACTCCGTCCGTGGCTTCAAGGACAGCAGCCTGGGCCCGCGCAGTACCCCGAGCATCGGTGAGGCCGCAGGTGGCAAGCCAGGCACCATCGCCGACCCGGATCAGGATCCGT > NC_002947/1794588‑1794877 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |