Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,337,586 | C→A | 18.3% | T99N (ACC→AAC) | PP_1163 → | FAD‑binding oxidoreductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,337,586 | 0 | C | A | 18.3% | 69.9 / 10.1 | 33 | T99N (ACC→AAC) | PP_1163 | FAD‑binding oxidoreductase |
Reads supporting (aligned to +/- strand): ref base C (17/10); new base A (3/3); total (20/13) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.59e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.16e-01 |
ACCGTTCATGGTCGCCGCCAGTGTGGATGCCCAGGGTCGGCCTTGGGCCACGCTGCTGGAAGGGCCAGAAGGGTTCGTAAGCTCGCCTGACCCTCGTATGCTGACGATCCACACCACGTTGCCAGCAGATGACCCCGCCACCCCCGGGTTGGCAGCCGGGCAGGCGGTCGGCCTGCTGGGGATCGAACTGCACACCCGTCGGCGCAATCGCATCAACGGGCAGATCCGCCACGCTGCCCAAGGGCAACTGCAAGTGGCCGTAGAGCAGGCGTTTGGCAACTGCCCG > NC_002947/1337446‑1337731 | cccGTTCATGGTCGCCGCCAGTGTGGATGCCCAGGGTCGGCCTTGGGCCACGCTGCTGGAAGGGCCAGAAGGGTTCGTAAGCTCGCCTGACCCTCGTATGCTGACGATCCACACCACGTTGCCAGCAGATGACCCCGCCACCCCCGGGtt < 2:107814/149‑1 (MQ=255) ccAGGGTCGGCCTTGGGCCACGCTGCTGGAAGGGCCAGAAGGGTTCGTAAGCTCGCCTGACCCTCGTATGCTGACGATCCACACCACGTTGCCAGCAGATGACCCCGCCACCCCCGGGTTGGCAGCCGGGCAGGCGGTCGGCCTGCTggg > 1:276255/1‑150 (MQ=255) ccAGGGTCGGCCTTGGGCCACGCTGCTGGAAGGGCCAGAAGGGTTCGTAAGCTCGCCTGACCCTCGTATGCTGACGATCCACACCACGTTGCCAGCAGATGACCCCGCCACCCCCGGGTTGGCAGCCGGGCAGGCGGTCGGCCTGCTggg > 1:468541/1‑150 (MQ=255) cAGGGTCGGCCTTGGGCCACGCTGCTGGAAGGGCCAGAAGGGTTCGTAAGCTCGCCTGACCCTCGTATGCTGACGATCCACACCACGTTGCCAGCAGATGACCCCGCCACCCCCGGGTTGGCAGCCGGGCAGGCGGTCGGCCTGCTggg > 1:308670/1‑149 (MQ=255) cAGGGTCGGCCTTGGGCCACGCTGCTGGAAGGGCCAGAAGGGTTCGTAAGCTCGCCTGACCCTCGTATGCTGACGATCCACACCACGTTGCCAGCAGATGACCCCGCCACCCCCGGGTTGGCAGCCGGGCAGGCGGTCGGCCTGCTggg < 2:308670/149‑1 (MQ=255) cGGCCTTGGGCCACGCTGCTGGAAGGGCCAGAAGGGTTCGTAAGCTCGCCTGACCCTCGTATGCTGACGATCCACACCACGTTGCCAGCAGATGACCCCGCCACCCCCGGGTTGGCAGCCGGGCAGGCGGTCGGCCTGCTGGGGATCGaa < 2:591943/150‑1 (MQ=255) gCCTTGGGCCACGCTGCTGGAAGGGCCAGAAGGGTTCGTAATCTCGCCTGACCATCGTATGCTGACGATCCACAGCACGTTGCCAGCAGATGACCCCGCCACCCCCGGGTTGGCAGCCGGGCAGGCGGGCGGCCTGCTGGTGATCGAACt > 1:152912/1‑150 (MQ=255) gCCTTGGGCCACGCTGCTGGAAGGGCCAGAAGGGTTCGTAAGCTCGCCTGACGCTCGTATGCTGACGATCCACACCACGTGGCCAGCAGATGACCCCGCCACCCCCGGATTGGCAGCCGGGCAGGCGGTCGGCCTGCTGGGGATCGAACt > 1:593037/1‑150 (MQ=255) gCCTTGGGCCACGCTGCTGGAAGGGCCAGAAGGGTTCGTAAGCTCGCCTGACCCTCGTATGCTGACGATCCACACCACGTTGCCAGCAGATGACCCCGCCACCCCCGGGTTGGCAGCCGGGCAGGCGGTCGGCCTGCTGGGGATCGAACt > 2:331494/1‑150 (MQ=255) gCCTTGGGCCACGCTGCTGGAAGGGCCAGAAGGGTTCGTAAGCTCGCCTGACCCTCGTATGCTGACGATCCACACCACGTTGCCAGCAGATGACCCCGCCACCCCCGGGTTGGCAGCCGGGCAGGCGGGCGGCCTGCTGGGGATCGAACt > 1:152950/1‑150 (MQ=255) ttGGGCCACGCTGCTGGAAGGGCCAGAAGGGTTCGTAAGCTCGCCTGACCCTCGTATGCTGACGATCCACACCACGTTGCCAGCAGATGACCCCGCCACCCCCGGGTTGGCAGCCGGGCAGGCGGTCGGCCTGCTGGGGATCGAACTGca > 2:148491/1‑150 (MQ=255) ggCCACGCTGCTGGAAGGGCCAGAAGGGTTCGTAAGCTCGCCTGACCCTCGTATGCTGACGATCCACACCACGTTGCCAGCAGATGACCCCGCCACCCCCGGGTTGGCAGCCGGGCAGGCGGTCGGCCTGCTGGGGATCGAACTGCacac > 2:603158/1‑150 (MQ=255) cAGAAGGGTTCGTAAGCTCGCCTGACCCTCGTATGCTGACGATCCACACCACGTTGCCAGCAGATGACCCCGCCACCCCCGGGTTGGCAGCCGGGCAGGCGGTCGGCCTGCTGGGGATCGAACTGCACACCCGTCGGCGCAATCGCATCa > 2:179220/1‑150 (MQ=255) gAAGGGTTCGTAAGCTCGCCTGACCCTCGTATGCTGACGATCCACACCACGTTGCCAGCAGATGACCCCGCCACCCCCGGGTTGGCAGCCGGGCAGGCGGTCGGCCTGCTggg < 1:112212/113‑1 (MQ=255) gAAGGGTTCGTAAGCTCGCCTGACCCTCGTATGCTGACGATCCACACCACGTTGCCAGCAGATGACCCCGCCACCCCCGGGTTGGCAGCCGGGCAGGCGGTCGGCCTGCTggg > 2:112212/1‑113 (MQ=255) aGCTCGCCTGCCCCTCGTATGCTGCCGCTACACACCCCGTTGCCAGCAGATGACCCCGCCACCCCCGGGTTGGCAGCCGGGCAGGCGGTCGGCCTGCTGGGGATCGAACTGCACACCCGTCGGCGCAATCGCATCAACGGGCAGATCCGc < 2:468541/150‑1 (MQ=255) gCTCGCCTGACCCTCGTATGCTGACGATCCACACCACGTTGCCAGCAGATGACCCCGCCACCCCCGGGTTGGCAGCCGGGCAGGCGGTCGGCCTGCTGGGGATCGAACTGCACACCCGTCGGCGCAATCGCATCAACGGGCAGATCCGcc > 2:327291/1‑150 (MQ=255) gCCTGACCCTCGTATGCTGACGATCCACACCACGTTGCCAGCAGATGACCCCGCCACCCCCGGGTTGGCAGCCGGGCAGGCGGTCGGCCTGCTGGGGATCGGCCTTCACACCCGTCGGCGCAATCGCATCAACGGGCAGATCCGCCACGc > 1:375259/1‑150 (MQ=255) ccTGACCCTCGTATGCTGACGATCCACACCACGTTGCCAGCAGATGACCCCGCCACCCCCGGGTTGGCAGCCGGGCAGGCGGTCGGCCTGCTGGGGATCGAACTGCACACCCGTCGGCGCAATCGCATCAACg > 2:98777/1‑133 (MQ=255) ccTGACCCTCGTATGCTGACGATCCACACCACGTTGCCAGCAGATGACCCCGCCACCCCCGGGTTGGCAGCCGGGCAGGCGGTCGGCCTGCTGGGGATCGAACTGCACACCCGTCGGCGCAATCGCATCAACg < 1:98777/133‑1 (MQ=255) cGTATGCTGACTATCCACACCACGTTGCCAGCAGATGACCCCGCCACCCCCGGGTTGGCAGCCGGGCAGGCGGTCGGCCTGCTGGGGATCGAACTGCACACCCGTCGGCGCAATCGCACCAACGGGCAGATCCGCCACGCTGCCCAAggg < 2:276255/150‑1 (MQ=255) tGACGATCCACACCACGTTGCCAGCAGATGACCCCGCCACCCCCGGGTTGGCAGCCGGGCAGGCGGTCGGCCTGCTGGGGATCGAACTGCACACCCGTCGGCGCAATCGCATCAACGGGCAGATCCGCCACGCTGCCCAAGGGCAACTGc > 1:525917/1‑150 (MQ=255) gATCCACACCACGTTGCCAGCAGATGACCCCGCCACCCCCGGGTTGGCAGCCGGGCAGGCGGTCGGCCTGCTGGGGATCGAACTGCACACCCGTCGGCGCAATCGCATCAACGGGCAGATCCGCCACGCTGCCCAAGGGCAACTGCAAGt > 1:610163/1‑150 (MQ=255) cacaCCACGTTGCCAGCAGATGACCCCGCCACCCCCGGGTTGGCAGCCGGGCAGGCGGTCGGCCTGCTGGGGATCGAACTGCACACCCGTCGGCGCAATCGCATCAACGGGCAGATCCGCCACGCTGCCCAAGGGCAACTGCAAGTGGcc < 2:610163/150‑1 (MQ=255) accacGTTGCCAGCAGATGACCCCGCCACCCCCGGGTTGGCAGCCGGGCAGGCGGTCGGCCTGCTGGGGATCGAACTGCACACCCGTCGGCGCAATCGCATCAACGGGCAGATCCGCCACGCTGCCCAAGGGCAACTGCAAGTGGCCGTa > 1:137549/1‑150 (MQ=255) cacGTTGCCAGCAGATGACCCCGCCACCCCCGGGTTGGCAGCCGGGCAGGCGGTCGGCCTGCTGGGGATCGAACTGCACACCCGTCGGCGCAATCGCATCAACGGGCAGATCCGCCACGCTGCCCAAGGGCAACTGCAAGTGGCCGTaga < 1:603158/150‑1 (MQ=255) ccggctgCCAACCCGGGGGTGGCAGCCGGGCAGGCGGTCGGCCTGCTGGGGATCGAACTGCACACCCGTCGGCGCAATCGCATCAACGGGCAGATCCGCCACGCTGCCCAAGGGCAACTGCAAGTGGCCGTAGAGCAGGCGTTTGGCAAc > 2:1694/7‑150 (MQ=255) gctgCCAACCCGGGGGTGGCGGCCGGGCAGGCGGTCGGCCTGCTGGGGATCGAACTGCACACCCGTCGGCGCAATCGCATCAACGGGCAGATCCGCCACGCTGCCCAAgg < 2:203492/107‑1 (MQ=255) gctgCCAACCCGGGGGTGGCGGCCGGGCAGGCGGTCGGCCTGCTGGGGATCGAACTGCACACCCGTCGGCGCAATCGCATCAACGGGCAGATCCGCCACGCTGCCCAAgg < 2:203543/107‑1 (MQ=255) gctgCCAACCCGGGGGTGGCGGCCGGGCAGGCGGTCGGCCTGCTGGGGATCGAACTGCACACCCGTCGGCGCAATCGCATCAACGGGCAGATCCGCCACGCTGCCCAAgg > 1:203543/4‑110 (MQ=255) gctgCCAACCCGGGGGTGGCGGCCGGGCAGGCGGTCGGCCTGCTGGGGATCGAACTGCACACCCGTCGGCGCAATCGCATCAACGGGCAGATCCGCCACGCTGCCCAAgg > 1:203492/4‑110 (MQ=255) gctgCCAACCCGGGGGTGGCAGCCGGGCAGGCGGTCGGCCTGCTGGGGATCGAACTGCACACCCGTCGGCGCAATCGCATCAACGGGCAGATCCGCCACGCTGCCCAAGGGCAACTGCAAGTGGCCGTAGAGCAGGCGTTTGGCAACTGc < 1:1694/147‑1 (MQ=255) gCCACCCCCGGGTTGGCAGCCGGGCAGGCGGTCGGCCTGCTGGGGATCGAACTGCACACCCGTCGGCGCAATCGCATCAACGGGCAGATCCGCCACGCTGCCCAAGGGCAACTGCAAGTGGCCGTAGAGCAGGCGTTTGGCAACTGCCCg < 2:525917/150‑1 (MQ=255) | ACCGTTCATGGTCGCCGCCAGTGTGGATGCCCAGGGTCGGCCTTGGGCCACGCTGCTGGAAGGGCCAGAAGGGTTCGTAAGCTCGCCTGACCCTCGTATGCTGACGATCCACACCACGTTGCCAGCAGATGACCCCGCCACCCCCGGGTTGGCAGCCGGGCAGGCGGTCGGCCTGCTGGGGATCGAACTGCACACCCGTCGGCGCAATCGCATCAACGGGCAGATCCGCCACGCTGCCCAAGGGCAACTGCAAGTGGCCGTAGAGCAGGCGTTTGGCAACTGCCCG > NC_002947/1337446‑1337731 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |