| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,344,106 | G→T | 14.3% | P13T (CCT→ACT) | PP_1168 ← | TRAP dicarboxylate transporter subunit DctQ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,344,106 | 0 | G | T | 14.3% | 72.6 / 3.7 | 28 | P13T (CCT→ACT) | PP_1168 | TRAP dicarboxylate transporter subunit DctQ |
| Reads supporting (aligned to +/- strand): ref base G (11/13); new base T (2/2); total (13/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.27e-01 | |||||||||||
CAGCACGTAGCGGGCGAAGATGCCCCACGGGATGATCAGCGTCATGGCCAGGATCGACAGGCCCGCGATCCAGATGCAACTGCGGTACAGCGTGTCGTTCACGCTCAGGAAAAGCGATTTCATAGGCATCACCAAAGCGGCAGGGCGGCGGGCGCCGCACTGCCGAGGTCGATTGGGCAAGGGCGGCTGTTACTGGACGGCGTCGATACGCTTCATCAGGTCGGCGTACTGCGCGCCGTATTTTTCGCGTACCGAAGCCGTGGCGTCGTAGAACGGCTTCTTGTCGACGGT > NC_002947/1343963‑1344253 | cAGCACGTAGCGGGCGAAGATGCCCCACGGGATGATCAGCGTCATGGCCAGGATCGACAGGCCCGCGATCCAGATGCAACTGCGGTACAGCGTGTCGTTCACGCTCAGGAAAAGCGATTTCATAGGCATCACCAAAGCGGCAGGgcggcg < 1:84583/150‑1 (MQ=255) cccACGGGATGATCAGCGTCATGGCCAGGATCGACAGGCCCGCGATCCAGATGCAACTGCGGTACAGCGTGTCGTTCACGCTCAGGAAAAGCGATTTCATAGGCATCACCAAAGCGGCAGGGCGGCGGGCGCCGCACTGCCGAGGTCGAt > 1:312944/1‑150 (MQ=255) cATGGCCAGGATCGACAGGCCCGCGATCCAGATGCAACTGCGGTACAGCGTGTCGTTCACGCTCAGGAAAAGCGATTTCATAGGCATCACCAAAGCGGCAGGGCGGCGGGCGCCGCACTGCCGAGGTCGATTGGGCAAGGGCGGCTGTTa < 1:55844/150‑1 (MQ=255) ccAGGATCGACAGGCCCGCGATCCAGATGCAACTGCGGTACAGCGTGTCGTTCACGCTCAGGAAAAGCGATTTCATAGGCATCACCAAAGCGGCAGGGCGGCGGGCGCCGCACTGCCGAGGTCGATTGGGCAAGGGCGGCTGTTACTGGa < 2:424449/150‑1 (MQ=255) aGGATCGACAGGCCCGCGATCCAGATGCAACTGCGGTACAGCGTGTCGTTCACGCTCAGGAAAAGCGATTTCATAGGCATCACCAAAGCGGCAGGGCGGCGGGCGCCGCACTGCCGAGGTCGATTGGGCAAGGGCGGCTGTTACTGGACg > 1:451477/1‑150 (MQ=255) tCCAGATGCAACGGCGGTACAGCGTGTCGTTCACGCTCAGGAAAAGCGATTTCATAGGCATCACCAAAGCGGCAGGGCGGCGGGCGCCGCACTGCCGAGGTCGATTGGGCAAGGGCGGCTGTTACTGGACGGCGTCGATACGCTtcatca < 2:34553/150‑1 (MQ=255) cAGATGCAACTGCGGTACAGCGTGTCGTTCACGCTCAGGAAAAGCGATTTCATAGGCATCACCAAAGCGGCAGGGCGGCGGGCGCCGCACTGCCGAGGTCGATTGGGCAAGGGCGGCTGTTACTGGACGGCGTCGATACGCTTCATCAgg < 1:352602/150‑1 (MQ=255) aGATGCAACTGCGGTACAGCGTGTCGTTCACGCTCAGGAAAAGCGATTTCATAGGCATCACCAAAGCGGCAGGGCGGCGGGCGCCGCACTGCCGAGGTCGATTGGGCAAGGGCGGCTGTTACTGGACGGCGTCGATACGCTtcatca < 2:552472/147‑1 (MQ=255) aGATGCAACTGCGGTACAGCGTGTCGTTCACGCTCAGGAAAAGCGATTTCATAGGCATCACCAAAGCGGCAGGGCGGCGGGCGCCGCACTGCCGAGGTCGATTGGGCAAGGGCGGCTGTTACTGGACGGCGTCGATACGCTtcatca > 1:552472/1‑147 (MQ=255) gTTCACGCTCAGGAAAAGCGATTTCATAGGCATCACCAAAGCGGCAGGGCGGCGGGCGCCGCACTGCCGAGGt < 2:529372/73‑1 (MQ=255) gTTCACGCTCAGGAAAAGCGATTTCATAGGCATCACCAAAGCGGCAGGGCGGCGGGCGCCGCACTGCCGAGGt > 1:529372/1‑73 (MQ=255) gAAAAGCGATTTCATAGGCATCACCAAAGCGGCAGGGCGGCGGGCGCCGCACTGCCGAGGTCGATTGGGCAAGGGCGGCTGTTACTGGACGGCGTCGATACGCTtcatca < 1:341523/110‑1 (MQ=255) gAAAAGCGATTTCATAGGCATCACCAAAGCGGCAGGGCGGCGGGCGCCGCACTGCCGAGGTCGATTGGGCAAGGGCGGCTGTTACTGGACGGCGTCGATACGCTtcatca > 2:341523/1‑110 (MQ=255) gAAAAGCGATTTCATAGGCATCACCAAAGCGGCAGGGCGGCGGGCGCCGCACTGCCGAGGTCGATTGGGCAAGGGCGGCTGTTACTGGACGGCGTCGATACGCTtcat > 1:218459/1‑108 (MQ=255) gAAAAGCGATTTCATAGGCATCACCAAAGCGGCAGGGCGGCGGGCGCCGCACTGCCGAGGTCGATTGGGCAAGGGCGGCTGTTACTGGACGGCGTCGATACGCTtcat < 2:218459/108‑1 (MQ=255) aTTTCATAGGCATCACCAAAGCGGCAGGGCGGCGGGCGCCGCACTGCCGAGGTCGATTGGGCAAGGGCGGCTGTTACTg < 2:390854/79‑1 (MQ=255) aTTTCATAGGCATCACCAAAGCGGCAGGGCGGCGGGCGCCGCACTGCCGAGGTCGATTGGGCAAGGGCGGCTGTTACTg > 1:390854/1‑79 (MQ=255) tCATAGGCATCACCAAAGCGGCAGGGCGGCGGGCGCCGCACTGCCGAGGTCGATTGGGCAAGGGCGGCTGTTACTGGACGGCGTCGATACGCTTCATCAGGTCGGCGTACTGCGCGCCGTATTTTTCGCGTACCGAAGCCGTGGcgtcgt > 2:275285/1‑150 (MQ=255) cATAGGCATCACCAAAGCGGCAGGGCGGCGGGCGCCGCACTGCCGAGGTCGAGTGGGCAAGGGCGGCTGTTACTGGACGGCGTCGATACGCTTCATCAGGTCGGCGTACTGCGCGCCGTATTTTTCGCGTACCGAAGCCGTGGCGTCGTa < 1:67341/150‑1 (MQ=255) ggCATCACCAAAGCGGCAGGGCGGCGGGCGCCGCACTGCCGAGGTCGATTGGGCAAGGGCGGCTGTTACTGGACGGCGTCGATACGCTTCATCAGGTCGGCGTACTGCGCGCCGTATTTTTCGCGTACCGAAGCCGTGGCGTCGTAGAAc > 1:400678/1‑150 (MQ=255) aGCGGCAGGGCGGCGGGCGCCGCACTGCCGAGGTCGATTGGGCAAGGGCGGCTGTTACTGGACGGCGTCGATACGCTTCATCAGGTCGGCGTACTGCGCGCCGTATTTTTCGCGTACCGAAGCCGTGGCGTCGTAGAACGGCTTCTTGTc < 2:312944/150‑1 (MQ=255) cGGCAGGGCGGCGGGCGCCGCACTGCCGAGGTCGATTGGGCAAGGGCGGCTGTTACTGGACGGCGTCGATACGCTTCATCAGGTCGGCGTACTGCGCGCCGTATTTTTCGCGTACCGAAGCCGTGGCGTCGTAGAACGGCTTCTTGTCGa < 2:400678/150‑1 (MQ=255) ggCAGTGCGGCGCCCGCCGCCCTGCCGAGGTCGATTGGGCAAGGGCGGCTGTTACTGGa < 1:457759/59‑1 (MQ=18) ggCAGTGCGGCGCCCGCCGCCCTGCCGAGGTCGATTGGGCAAGGGCGGCTGTTACTGGa > 2:457759/1‑59 (MQ=18) gCAGTGCGGCGCCCGCCGCCCTGCCGAGGTCGATTGGGCAAGGGCGGCTGTTACTGGACGGCGTCGATACGCTTCATCAGGTCGGCGTACTGCGCGCCGTATTTTTCGCGTACCGAAGCCGTGGcgtc < 2:245263/128‑1 (MQ=255) gCAGTGCGGCGCCCGCCGCCCTGCCGAGGTCGATTGGGCAAGGGCGGCTGTTACTGGACGGCGTCGATACGCTTCATCAGGTCGGCGTACTGCGCGCCGTATTTTTCGCGTACCGAAGCCGTGGcgtc > 1:245263/1‑128 (MQ=255) aGGGCGGCGGGCGCCTCACTGCCGAGGTCGATTGGGCAAGGGCGGCTGTTACTGGACGGCGTCGATACGCTTCATCAGGTCGGCGTACTGCGCGCCGTATTTTTCGCGTACCGAAGCCGTGGCGTCGTAGAACGGCTTCTTGTCGACGGt > 1:185741/1‑150 (MQ=255) aGGGCGGCGGGCGCCGCACTGCCGAGGTCGATTGGGCAAGGGCGGCTGTTACTGGACGGCGTCGATACGCTTCATCAGGTCGGCGTACTGCGCGCCGTATTTTTCGCGTACCGAAGCCGTGGCGTCGTAGAACGGCTTCTTGTCGACGGt > 1:513488/1‑150 (MQ=255) | CAGCACGTAGCGGGCGAAGATGCCCCACGGGATGATCAGCGTCATGGCCAGGATCGACAGGCCCGCGATCCAGATGCAACTGCGGTACAGCGTGTCGTTCACGCTCAGGAAAAGCGATTTCATAGGCATCACCAAAGCGGCAGGGCGGCGGGCGCCGCACTGCCGAGGTCGATTGGGCAAGGGCGGCTGTTACTGGACGGCGTCGATACGCTTCATCAGGTCGGCGTACTGCGCGCCGTATTTTTCGCGTACCGAAGCCGTGGCGTCGTAGAACGGCTTCTTGTCGACGGT > NC_002947/1343963‑1344253 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |