Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,566,193 | G→T | 24.9% | intergenic (‑310/‑170) | PP_1374 ← / → pcaR | hypothetical protein/pca regulon transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,566,193 | 0 | G | T | 24.9% | 29.0 / 4.0 | 16 | intergenic (‑310/‑170) | PP_1374/pcaR | hypothetical protein/pca regulon transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base G (5/7); new base T (2/2); total (7/9) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.59e-01 |
TACGCAACCCTGACATCATCTGGCGTAAGTAGCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGCGATTATCGGCCGTTTGTTCGATAATCGCAC > NC_002947/1566052‑1566335 | tACGCAACCCTGACATCATCTGGCGTAAGTAGCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGa < 2:556487/150‑1 (MQ=255) cAACCCTGAAATCATCTGGCGTAAGTAGCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGcc < 1:95461/150‑1 (MQ=255) tGACATCATCTGGCGTAAGTAGCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTAGACAGGCCTCGGGGATAGAAGTTCGCGGGAGGGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCTTTCGGCGAGGCCGttttt < 1:75575/150‑4 (MQ=255) gCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTa > 2:83878/1‑150 (MQ=255) aCAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTATGATGAGGGGTACCTGACCAGTCTCTCCa > 1:157019/1‑150 (MQ=255) aGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCaaa < 2:475373/150‑1 (MQ=255) aCAACGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACaa > 2:313150/1‑144 (MQ=255) aCAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACaa < 1:313150/144‑1 (MQ=255) aGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGTCACAAGTGGCATGGGAAAGGtat < 1:83878/150‑1 (MQ=255) ttGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCTTTCGGCGAGGCCGttt < 1:461917/58‑2 (MQ=17) ttGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCTTTCGGCGAGGCCGttt > 2:461917/1‑57 (MQ=17) aaTGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGCGATTATCGGCCGTTTGtt < 2:525683/150‑1 (MQ=255) cGGCCTCGCCTTTCGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGCGATTATCGGCCGTTTGTTCGATAATCg > 1:277757/1‑150 (MQ=255) ggCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGt > 1:164480/1‑94 (MQ=255) ggCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGt < 2:164480/94‑1 (MQ=255) ccTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGCGATTATCGGCCGTTTGTTCGATAATCGCAc > 1:251331/1‑150 (MQ=255) | TACGCAACCCTGACATCATCTGGCGTAAGTAGCAGATTGTGCCCGCGAACAGTTGGGACCTTTCGTACAAAGTTTGAAAGGAATGGCGGATAGAAGTTCGTTGCAATGTCAGGGCGGGCCGTAATGAAAAACGGCCTCGCCGAAAGGCGAGGCCGTTGCCTGGGGACTTCTACGGTGGGTACCTGACCAGTCTCTCCAAAGAAGCCACAAGTGGCATGGGAAAGGTATAAGCAAAAGTGTCGGCGGTCAATTGCGATTATCGGCCGTTTGTTCGATAATCGCAC > NC_002947/1566052‑1566335 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |