| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,113,722 | A→C | 11.8% | Y203D (TAT→GAT) | PP_1882 ← | membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,113,722 | 0 | A | C | 11.8% | 81.0 / 4.3 | 34 | Y203D (TAT→GAT) | PP_1882 | membrane protein |
| Reads supporting (aligned to +/- strand): ref base A (16/14); new base C (2/2); total (18/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.82e-01 | |||||||||||
GCACAACAACCCGTTCACCAGGGCGTATTCCAGGCGCCAGCTGGCCAGCTCATGGGTTGGCAGCACGATCGATGTGACCCAGTCCGTGTTGATCAGGTTCATCGCATAAAGGGCAACGGGCTGGCCGTTGTCGCCCTGATAAGGGCGCTCGCGCAATTCGATGCGGCTATCGTCGCGTTCGATTTCCAGCAGGATCTCCTCACGCTCGTCGCTGATCGAGCTGAGCATCATGTAAGACGAGTTGAACGGTTGGTACTGGAGGTCGATCCTGTGCCCCGTGGCCGCGTA > NC_002947/2113582‑2113869 | gCACAACAACCCGTTCACCAGGGCGTATTCCAGGCGCCAGCTGGCCAGCTCATGGGTTGGCAGCACGATCGATGTGACCCAGTCCGTGTTGATCAGGTTCATCGCATAAAGGGCAACGGGCTGGCCGTTGTCGCCCTGATAAGGGCGCTc > 2:507629/1‑150 (MQ=255)gCACAACAACCCGTTCACCAGGGCGTATTCCAGGCGCCAGCTGGCCAGCTCATGGGTTGGCAGCACGATCGATGTGACCCAGTCCGTGTTGATCAGGTTCATCGCATAAAGGGCAACGGGCTGGCCGTTGTCGCCCTGATAAGGGCGCTc > 1:2665/1‑150 (MQ=255) caacaaCCCGTTCACCAGGGCGTATTCCAGGCGCCAGCTGGCCAGCTCATGGGTTGGCAGCACGAGCGATGTGACCCAGTCCGTGTTGATCAGGTTCATCGCATAAAGGGCAACGGGCTGGCCGTTGTCGCCCTGATAAGGGCGCTcgcg > 1:518526/1‑150 (MQ=255) ccGTTCACCAGGGCGTATTCCAGGCGCCAGCTGGCCAGCTCATGGGTTGGCAGCACGATCGATGTGACCCAGTCCGTGTTGATCAGGTTCATCGCATAAAGGGCAACGGGCTGGCCGTTGTCGCCCTGATAAGGGCGCTCGCGCAATTCg > 1:574984/1‑150 (MQ=255) ccAGGGCGTATTCCAGGCGCCAGCTGGCCAGCTCATGGGTTGGCAGCACGATCGATGTGACCCAGTCCGTGTTGATCAGGTTCATCGCATAAAGGGCAACGGGCTGGCCGTTGTTGCCCTTATCAGGgcga > 2:121905/1‑130 (MQ=255) ccAGGGCGTATTCCAGGCGCCAGCTGGCCAGCTCATGGGTTGGCAGCACGATCGATGTGACCCAGTCCGTGTTGATCAGGTTCATCGCATAAAGGGCAACGGGCTGGCCGTTGTCGCCCTTATCAGGgcga < 1:121905/131‑2 (MQ=255) ccAGGGCGTATTCCAGGCGCCAGCTGGCCAGCTCATGGGTTGGCAGCACGATCGATGTGACCCAGTCCGTGTTGATCAGGTTCATCGCATAAAGGGCAACGGGCTGGCCGTTGTCGCCCTTATCAGGgcga > 2:121450/1‑130 (MQ=255) ccAGGGCGTATTCCAGGCGCCAGCTGGCCAGCTCATGGGTTGGCAGCACGATCGATGTGACCCAGTCCGTGTTGATCAGGTTCATCGCATAAAGGGCAACGGGCTGGCCGTTGTCGCCCTTATCAGGgcga < 1:121450/131‑2 (MQ=255) ccAGGCGCCAGCTGGCCAGCTCATGGGTTGGCAGCACGATCGATGTGACCCAGTCCGTGTTGATCAGGTTCATCGCATAAAGGGCAACGGGCTGGCCGTTGTCGCCCTGATAAGGGCGCTCGCGCAATTCGATGCGGCTATCGTCGCGtt < 2:109337/150‑1 (MQ=255) cAGGCGCCAGCTGGCCAGCTCATGGGTTGGCAGCACTATCGATGTGACCCAGTCCGTGTTGATCAGGTTCATCGCATAAAGGGCAACGGGTTGGCCGTTGTCGCCCTGATAAGGGCGCTCGCGCAATTCGATGCGGCTATCGTCGCGTTc < 1:3820/150‑1 (MQ=255) cAGGCGCCAGCTGGCCAGCTCATGGGTTGGCAGCACGATCGATGTGACCCAGTCCGTGTTGATCAGGTTCATCGCATAAAGGGCAACGGGCTGGCCGTTGTCGCCCTGATAAGGGCGCTCGCGCAATTCGATGCGGCTATCGTCGCGTTc > 1:602327/1‑150 (MQ=255) gCTGGCCAGCTCATGGGTTGGCAGCACGATCGATGTGACCCAGTCCGTGTTGATCAGGTTCATCGCATAAAGGGCAACGGGCTGGCCGTTGTCGCCCTGATAAGGGCGCTCGCGCAATTCGATGCGGCTATCGTCGCGTTCGATTTCcag < 1:959/150‑1 (MQ=255) ggTTGGCAGCACGATCGATGTGACCCAGTCCGTGTTGATCAGGTTCATCGCATAAAGGGCAACGGGCTGGCCGTTGTCGCCCTGATAAGGGCGCTCGCGCAATTCGATGCGGCTATCGTCGCGTTCGATTTCCAGCAGGATCTCCTCACg > 1:343307/1‑150 (MQ=255) tGGCAGCACGATCGATGTGACCCAGTCCGTGTTGATCAGGTTCATCGCATAAAGGGCAACGGGCTGGCCGTTGTCGCCCTGATAAGGGCGCTCGCGCAATTCGATGCGGCTATCGTCGCGTTCGATTTCCAGCAGGATCTCCTCACGCtc < 2:574984/150‑1 (MQ=255) gcagcaCGACCGATGTGACCCAGTCCGTGTTGATCAGGTTCATCGCATAAAGGGCAACGGGCTGGCCGTTGTCGCCCTGATAAGGGCGCTCGCGCAATTCGATGCGGCTATCGTCGCGTTCGATTTCCAGCAGGATCTCCTCACGCtcgt < 2:578912/150‑1 (MQ=255) tgACCCAGTCCGTGTTGATCAGGTTCATCGCATAAAGGGCAACGGGCTGGCCGTTGTCGCCCTGATAAGGGCGCTCGCGCAATTCGATGCGGCTATCGTCGCGTTCGATTTACAGCAGGATTTCCTCACGCTCGTCGCTGATCGAGCTGa > 2:148384/1‑150 (MQ=255) cccAGTCCGTGTAGATCAGGGTGATCGCCGAATCGGCAACGGGCAGGCCGTTGTCGCCCTGATAAGGGCGCTCGCGCAATTCGATGCGGCTATCGTCGCGTTCGATTTCCAGCAGGATCTCCTCACGCTCGTCGCTGATCGAGCTGAGca > 2:183297/1‑150 (MQ=255) cAGTCCGTGTTGATCAGGTTCATCGCATAAAGGGCAACGGGCTGGCCGTTGTCGCCCTGATAAGGGCGCTCGCGCAATTCGATGCGGCTATCGTCGCGTTCGATTTCCAGCAGGATCTCCTCACGCTCGTCGCTGATCGAGCTGAGcatc > 1:561475/1‑150 (MQ=255) tCAGGTTCATCGCATAAAGGGCAACGGGCTGGCCGTTGTCGCCCTGATAAGGGCGCTCGCGCAATTCGATGCGGCTATCGTCGCGTTCGATTTCCAGCAGGATCTCCTCACGCTCGTCGCTGATCGAGCTGAGCATCATGTAAGACGAGt > 2:353050/1‑150 (MQ=255) aGGTTCATCGCATAAAGGGCAACGGGCTGGCCGTTGTCGCCCTGATAAGGGCGCTCGCGCAATTCGATGCGGCTATCGTCGCGTTCGATTTCCAGCAGGATCTCCTCACGCTCGTCGCTGATCGAGCTGAGcatc > 1:542841/1‑135 (MQ=255) aGGTTCATCGCATAAAGGGCAACGGGCTGGCCGTTGTCGCCCTGATAAGGGCGCTCGCGCAATTCGATGCGGCTATCGTCGCGTTCGATTTCCAGCAGGATCTCCTCACGCTCGTCGCTGATCGAGCTGAGcatc < 2:542841/135‑1 (MQ=255) tCGCATAAAGGGCAACGGGCTGGCCGTTGTCGCCCTGATAAGGGCGCTCGCGCAATTCGATGCGGCTATCGTCGCGTTCGATTTCCAGCAGGATCTCCTCACGCTCGTCGCTGATCGAGCTGAGCATCATGTAAGACGAGTTGAACGGtt < 2:397380/150‑1 (MQ=255) tCGCATAAAGGGCAACGGGCTGGCCGTTGTCGCCCTGATAAGGGCGCTCGCGCAATTCGATGCGGCTATCGTCGCGTTCGATTTCCAGCAGGATCTCCTCACGCTCGTCGCTGATCGAGCTGAGCATCATGTAAGACGAGTTGAACGGtt < 2:518526/150‑1 (MQ=255) tCGCATAAAGGGCAACGGGCTGGCCGTTGTCGCCCTGATAAGGGCGCTCGCGCAATTCGATGCGGCTATCGTCGCGTTCGATTTCCAGCAGGATCTCCTCACGCTCGTCGCTGATCGAGCTGAGCATCATGTAAGACGAGTTGAACGGtt > 1:397380/1‑150 (MQ=255) aGGGCAACGGGCTGGCCGTTGTCGCCCTGATAAGGGCGCTCGCGCAATTCGATg < 2:567663/54‑1 (MQ=255) aGGGCAACGGGCTGGCCGTTGTCGCCCTGATAAGGGCGCTCGCGCAATTCGATg > 1:567663/1‑54 (MQ=255) aGGGCAACGGGCTGGCCGTTGTCGCCCTGATAAGGGCGCTCGCGCAATTCGATGCGGCTATCGTCGCGTTCGATTTCCAGCAGGATCTCCTCACGCTCGTCGCTGATCGAGCTGAGCATCATGTAAGACGAGTTGAACGGTTGGTACTgg < 1:507629/150‑1 (MQ=255) ggCAACGGGCTGGCCGTTGTCGCCCTGATAAGGGCGCTCGCGCAATTCGATGCGGCTATCGTCGCGTTCGATTTCCAGCAGGATCTCCTCACGCTCGTCGCTGATCGAGCTGAGCATCATGTAAGACGAGTTGAACGGTTGGTACTGGAg < 2:561475/150‑1 (MQ=255) cAACGGGCTGGCCGTTGTCGCCCTGATAAGGGCGCTCGCGCAATTCGATGCGGCTATCGTCGCGTTCGATTTCCAGCAGGATCTCCTCACGCTCGTCGCTGATCGAGCTGAGCATCATGTAAGACGAGTTGAACGGTTGGTACTGGAGGt < 1:353050/150‑1 (MQ=255) gCTGGCCGTTGTCGCCCTGATAAGGGCGCTCGCGCAATTCGATGCGGCTATCGTCGCGTTCGATTTCCAGCAGGATCTCCTCACGCTCGTCGCTGATCGAGCTGAGCATCATGTAAGACGAGTTGAACGGTTGGTACTGGAGGTCGATcc < 2:54143/150‑1 (MQ=255) cTGGCCGTTGTCGCCCTGATAAGGGCGCTCGCGCAATTCGATGCGGCTATCGTCGCGTTCGATTTCCAGCAGGATCTCCTCACGCTCGTCGCTGATCGAGCTGAGCATCATGTAAGACGAGTTGAACGGTTGGTACTGGAGGTCGATCCt > 1:158576/1‑150 (MQ=255) cGTTGTCGCCCTGATAAGGGCGCTCGCGCAATTCGATGCGGCTATCGTCGCGTTCGATTTCCAGCAGGATCTCCTCACGCTCGTCGCTGATCGAGCTGAGCATCATGTAAGACGAGTTGAACGGTTGGTACTGGAGGTCGATCCTGTGcc > 2:166275/1‑150 (MQ=255) gCCCTGATAAGGGCGCTCGCGCAATTCGATGCGGCTATCGTCGCGTTCGATTTCAAGCAGGATCTCCTCACGCTCGTCGCTGATCGAGCTGAGCATCATGTAAGACGAGTTGACCGGTTGGTACTGGAGGTCGATCCTGTGCCCCGTGGc > 1:98595/1‑150 (MQ=255) aTAAGGGCGCTGGCGCAATTCGATGCGGCTATCGTCGCGTTCGATTTCCAGCAGGATCTCCTCACGCTCGTCGCTGATCGAGCTGAGCATCATGTAAGACGAGTTGAACGGTTGGTACTGGAGGTCGATCCTGTGCCCCGTGGCCGCGTa < 2:2665/150‑1 (MQ=255) | GCACAACAACCCGTTCACCAGGGCGTATTCCAGGCGCCAGCTGGCCAGCTCATGGGTTGGCAGCACGATCGATGTGACCCAGTCCGTGTTGATCAGGTTCATCGCATAAAGGGCAACGGGCTGGCCGTTGTCGCCCTGATAAGGGCGCTCGCGCAATTCGATGCGGCTATCGTCGCGTTCGATTTCCAGCAGGATCTCCTCACGCTCGTCGCTGATCGAGCTGAGCATCATGTAAGACGAGTTGAACGGTTGGTACTGGAGGTCGATCCTGTGCCCCGTGGCCGCGTA > NC_002947/2113582‑2113869 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |