| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,165,021 | A→G | 10.8% | V187A (GTA→GCA) ‡ | PP_1920 ← | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,165,021 | 0 | A | G | 10.8% | 97.3 / 3.3 | 37 | V187A (GTA→GCA) ‡ | PP_1920 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (21/12); new base G (2/2); total (23/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.25e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.90e-01 | |||||||||||
TCGCAGTGGTAAAGACTTCATAGAACGTCGTGAAGTCTTTGTTGTACTCGATCATATCTTCGAAGGAGTTGGTCCACCCGCCACCAATAAGATCAGTAATATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTACAGCCATGCTTTCTAGAGATTGGCAAGGAAAGCCGGTATCGTGAACTGATGCTTCCTCAGTAAACGAGCCATGTCCAAACCAATGATGCAAAAGCGGGTCGGTGTAGTTTTGCTCGCAATCACTCCAGCGCCAGTTGAC > NC_002947/2164875‑2165160 | tCGCAGTGGTAAAGACTTCATAGAACGTCGTGAAGTCTTTGTTGTACTCGATCATATCTTCGAAGGAGTTGGTCCACCCGCCACCAATAAGATCAGTAATATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTACAg > 1:530624/1‑150 (MQ=255) cTTCATAGAACGTCGTGAAGTCTTTGTTGTACTCGATCATATCTTCGAAGGAGTTGGTCCACCCGCCACCAATAAGATCAGTAATATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTACAGCCATGCTTTCTagag > 1:238811/1‑150 (MQ=255) cATAGAACGTCGTGAAGTCTTTGTTGTACTCGATCATATCTTCGAAGGAGTTGGTCCACCCGCCACCAATAAGATCAGTAATATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTACAGCCATGCTTTCTAGAGAtt > 2:393277/1‑150 (MQ=255) aaCGTCGTGAAGTCTTTGTTGTACTCGATCATATCTTCGAAGGAGTTGGTCCACCCGCCACCAATAAGATCAGTAATATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTACAGCCATGCTTTCTAGAGATTGGCaa < 2:219039/150‑1 (MQ=255) gtcgtGAAGTCTTTGTTGTACTCGATCATATCTTCGAAGGAGTTGGTCCACCCGCCACCAATAAGATCAGTAATATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTACAGCCATGCTTTCTAGAGAtt > 2:229535/1‑142 (MQ=255) gtcgtGAAGTCTTTGTTGTACTCGATCATATCTTCGAAGGAGTTGGTCCACCCGCCACCAATAAGATCAGTAATATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTACAGCCATGCTTTCTAGAGAtt < 1:229535/142‑1 (MQ=255) gtGAAGTCTTTGTTGTACTCGATCATATCTTCGAAGGAGTTGGTCCACCCGCCACCAATAAGATCAGTAATATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTACAGCCATGCTTTCTAGAGATTGGCAAGGAAAg > 1:540881/1‑150 (MQ=255) tGAAGTCTTTGTTGTACTCGATCATATCTTCGAAGGAGTTGGTCCACCCGCCACCAATAAGATCAGTAATATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTACAGCCATGCTTTCTAGAGATTGGCAAGGAAAGc > 2:301547/1‑150 (MQ=255) gAAGTCTTTGTTGTACTCGATCATATCTTCGAAGGAGTTGGTCCACCCGCCACCAATAAGATCAGTAATATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTACAGCCATGCTTTCTAGAGATTGGCAAGGAAAGca > 2:536802/1‑149 (MQ=255) aaGTCTTTGTTGTACTCGATCATATCTTCGAAGGAGTTGGTCCACCCGCCACCAATAAGATCAGTAATATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTACAGCCATGCTTTCTAGAGATTGGCAAGGAAAGCCg < 2:530624/150‑1 (MQ=255) gtACTCGATCATATCTTCGAAGGAGTTGGTCCACCCGCCACCAATAAGATCAGTAATATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTACAGCCATGCTTTCTAGAGATTGACAAGGAAAGCCGGTATCGTGAAc > 1:480152/1‑150 (MQ=255) tCGATCATATCTTCGAAGGAGTTGGTCCACCCGCCACCAATAAGATCAGTACTATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTACAGCCATGCTTTCTAGAGATTGGCAAGGAAAGCCGGTATCGTGAACTGAt > 2:304793/1‑150 (MQ=255) gATCATATCTTCGAAGGAGTTGGTCCACCCGCCACCAATAAGATCAGTAATATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTACAg > 1:363325/1‑101 (MQ=255) gATCATATCTTCGAAGGAGTTGGTCCACCCGCCACCAATAAGATCAGTAATATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTACAg < 2:363325/101‑1 (MQ=255) tCATATCTTCGAAGGAGTTGGTCCACCCGCCACCAATAAGATCAGTAATATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTACAGCCATGCTTTCTAGAGATTGGCAAGGAAAGCCGGTATCGTGAACTGATGCtt > 2:544578/1‑150 (MQ=255) cTTCGAAGGAGTTGGTCCACCCGCCACCAATAAGATCAGTAATATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTACAGCCATGCTTTCTAGAGATTGGCAAGGAAAGCCGGTATCGTGAACTGATGCTTCCTCAg < 1:393277/150‑1 (MQ=255) ttCGAAGGAGTTGGTCCACCCGCCACCAATAAGATCAGTAATATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTGTAGCCATgt > 1:6838/1‑97 (MQ=255) ttCGAAGGAGTTGGTCCACCCGCCACCAATAAGATCAGTAATATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTGTAGCCATgt < 2:6838/98‑2 (MQ=255) ttCGAAGGAGTTGGTCCACCCGCCACCAATAAGATCAGTAATATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTACAGCCATGCTTTCTAGAGATTGGCAAGGAAAGCCGGTATCGTGAACTGATGCTTCCTCAGt > 1:413101/1‑150 (MQ=255) ttGGTCCACCCGCCACCAATAAGATCAGTAATATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTACa < 1:571056/81‑1 (MQ=255) ttGGTCCACCCGCCACCAATAAGATCAGTAATATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTACa > 2:571056/1‑81 (MQ=255) cACCCGCCACCAATAAGATCAGTAATATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTGTAGCCATgttg < 2:136622/84‑4 (MQ=255) cACCCGCCACCAATAAGATCAGTAATATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTGTAGCCATggcg > 1:136622/1‑81 (MQ=255) ccGCCACCAATAAGATCAGTAATATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTACAGCCATGCTTTCTAGAGATTGGCAAGGAAAGCCGGTATCGTGAACTGATGCTTCCTCAGTAAACGAGCCATGCCCAAAc > 1:104955/1‑150 (MQ=255) ccaccaATAAGATCAGTAATATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTACAGCCATGCTTTCTAGAGATTGGCAAGGAAAGCCGGTATCGTGAACTGATGCTTCCTCAGTAAACGAGCCATGTCCAAACCaa < 1:544578/150‑1 (MQ=255) accaATAAGATCAGTAATATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTACAGCCATGCTTTCTAGAGATTGGCAAGGAAAGCCGGTATCGTGAACTGATGCTTCCTCAGTAAACGAGCCATGTCCAAACCAatg > 1:369343/1‑150 (MQ=255) caATAAGATCAGTAATATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTACAGCCATGCTTTCTAGAGATTGGCAAGGAAAGCCGGTATCGTGAACTGATGCTTCCTCAGTAAACGAGCCATGTCCAAACCAatgat < 1:301547/150‑1 (MQ=255) aaTAAGATCAGTAATATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTACAGCCATGCTTTCTAGAGATTGGCAAGGAAAGCCg < 1:472250/97‑1 (MQ=255) aaTAAGATCAGTAATATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTACAGCCATGCTTTCTAGAGATTGGCAAGGAAAGCCg > 2:472250/1‑97 (MQ=255) gATCAGTAATATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTACAGCCATGCTTTCTAGAGATTGGCAAGGAAAGCCGGTATCGTGAACTGAt > 2:280735/1‑107 (MQ=255) gATCAGTAATATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTACAGCCATGCTTTCTAGAGATTGGCAAGGAAAGCCGGTATCGTGAACTGAt < 1:280735/107‑1 (MQ=255) aaTATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTACAGCCATGCTTTCTAGAGATTGGCAAGGAAAGCCGGTATCGTGAACTGATGCTTCCTCAGTAAACGAGCCATGTCCAAACCAATGATGCAAAAGCGGGTc < 2:369343/150‑1 (MQ=255) cGCATCAACGGGCAGAATCTCCAACATGGCTACAGCCATGCTTTCTAGAGATTGGCAAGGAAAGCCGGTATCGTGAACTGATGCTTCCTCAGTAAACGAGCCATGTCCAAACCAATGATGCAAAAGCGGGTCGGTGTAGTTTTGCTCGCa > 1:470308/1‑150 (MQ=255) gCAGAATCTCCAACATGGCTACAGCCATGCTTTCTAGAGATTGGCAAGGAAAGCCGGTATCGTGAACTGATGCTTCCTCAGTAAACGAGCCATGTCCAAACCAATGATGCAAAAGCGGGTCGGTGTAGTTTTGCTCGCAATCACTCCAgc > 1:323858/1‑150 (MQ=255) ctcCAACATGGCTACAGCCATGCTTTCTAGAGATTGGCAAGGAAAGCAGGTATCGTGAACTGAAGCTTCCTCAGTATACGATCCATGTCCAAACCAATGATGCAAAAGCGGGTCGGTGTAGTTTTGCTCGCAATCACTCCAGCGCCAGtt < 1:536802/150‑1 (MQ=255) ccAACATGGCTACAGCCATGCTTTCTAGAGATTGGCAAGGAAAGCCGGTATCGTGAACTGATGCTTCCTCAGTAAACGAGCCATGTCCAAACCAATGATGCAAAAGCGGGTCGGTGTAGTTTTGCTCGCAATCACTCCAGCGCCAGTTGa > 1:291671/1‑150 (MQ=255) cAACATGGCTACAGCCATGCTTTCTAGAGATTGGCAAGGAAAGCCGGTATCGTGAACTGATGCTTCCTCAGTAAACGAGCCATGTCCAAACCAATGATGCAAAAGCGGGTCGGTGTAGTTTTGCTCGCAATCACTCCAGCGCCAGTTGAc > 1:606049/1‑150 (MQ=255) | TCGCAGTGGTAAAGACTTCATAGAACGTCGTGAAGTCTTTGTTGTACTCGATCATATCTTCGAAGGAGTTGGTCCACCCGCCACCAATAAGATCAGTAATATCGAGGGTGCACTCCGCATCAACGGGCAGAATCTCCAACATGGCTACAGCCATGCTTTCTAGAGATTGGCAAGGAAAGCCGGTATCGTGAACTGATGCTTCCTCAGTAAACGAGCCATGTCCAAACCAATGATGCAAAAGCGGGTCGGTGTAGTTTTGCTCGCAATCACTCCAGCGCCAGTTGAC > NC_002947/2164875‑2165160 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |